RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MYH1P12882 1939 aa0.17□□□□□ -2.38
SCFD1-216ENST00000555550 TRPM7Q96QT4 1865 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 SYNJ1O43426 1573 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 OTOGQ6ZRI0 2925 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 VIRMAQ69YN4 1812 aaKnown RBP0.16□□□□□ -2.38
SCFD1-216ENST00000555550 A0A096LNT2 108 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 IGLV3-32A0A0A0MS00 114 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 C9JAW5 83 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 H3BRM9 83 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 J3KT08 172 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 UQCRQO14949 82 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 DEGS1O15121 323 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 MT-ND4LP03901 98 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 TCRAP04437 139 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 SCGB1A1P11684 91 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 OCIAD2Q56VL3 154 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 LINC00299Q6ZSB3 139 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 TEN1Q86WV5 123 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 OR4B1Q8NGF8 309 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 OTOSQ8NHW6 89 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 GRPEL2Q8TAA5 225 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 SELENOSQ9BQE4 189 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 LXNQ9BS40 222 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 C19orf12Q9NSK7 152 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 HIGD1AQ9Y241 93 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 TPRKBQ9Y3C4 175 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 ZANQ9Y493 2812 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 ZDBF2Q9HCK1 2354 aa0.16□□□□□ -2.38
SCFD1-216ENST00000555550 KDM5CP41229 1560 aa0.15□□□□□ -2.38
SCFD1-216ENST00000555550 MED12Q93074 2177 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 NCR3O14931 201 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 DNAL4O96015 105 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 MT-ND6P03923 174 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 TSPAN19P0C672 248 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 AKR1D1P51857 326 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 RPL37AP61513 92 aaKnown RBP0.15□□□□□ -2.39
SCFD1-216ENST00000555550 GLYATL3Q5SZD4 288 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 TMEM244Q5VVB8 128 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 C10orf111Q8N326 155 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 C5orf56Q8N8D9 126 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 OR4S1Q8NGB4 309 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 BRK1Q8WUW1 75 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 PLAC4Q8WY50 150 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 CIB3Q96Q77 187 aaPredicted RBP0.15□□□□□ -2.39
SCFD1-216ENST00000555550 CCL19Q99731 98 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 WFDC10AQ9H1F0 79 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 TMEM138Q9NPI0 162 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 HSPB8Q9UJY1 196 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 TNFSF18Q9UNG2 199 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 AKAP13Q12802 2813 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 ZCCHC6Q5VYS8 1495 aaKnown RBP0.15□□□□□ -2.39
SCFD1-216ENST00000555550 MAP2P11137 1827 aaKnown RBP0.15□□□□□ -2.39
SCFD1-216ENST00000555550 HELZP42694 1942 aaKnown RBP0.15□□□□□ -2.39
SCFD1-216ENST00000555550 BICRAQ9NZM4 1560 aa0.15□□□□□ -2.39
SCFD1-216ENST00000555550 CCDC168Q8NDH2 2452 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 DLEC1Q9Y238 1755 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 ABCA4P78363 2273 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 A0A087WTM6 91 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 TSTD3H0UI37 97 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 CDC42EP2O14613 210 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 NEFHP12036 1026 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 TPT1P13693 172 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 SRP9P49458 86 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 NDUFA6P56556 154 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 FXYD3Q14802 87 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 SPATA45Q537H7 98 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 HSD17B12Q53GQ0 312 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 GKN2Q86XP6 184 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 C5orf17Q8NAS9 161 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 LINC00208Q96KT6 92 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 FAM103A1Q9BTL3 118 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 COMMD3Q9UBI1 195 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 METTL1Q9UBP6 276 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 LSM2Q9Y333 95 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 HSPB11Q9Y547 144 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 ARHGEF10O15013 1369 aa0.14□□□□□ -2.39
SCFD1-216ENST00000555550 LRP1Q07954 4544 aaKnown RBP0.14□□□□□ -2.39
SCFD1-216ENST00000555550 AKAP11Q9UKA4 1901 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 LRRK2Q5S007 2527 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 APCP25054 2843 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 C3orf85A0A1B0GTC6 90 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 A0A1W2PPM0 123 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 TMEM189A5PLL7 270 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 HLA-DRB4P13762 266 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 S100GP29377 79 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 SNRPD3P62318 126 aaKnown RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 LYPD5Q6UWN5 251 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 CASC2Q6XLA1 102 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 TCTEX1D1Q8N7M0 179 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 TMEM35BQ8NCS4 154 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 SKA2Q8WVK7 121 aaPredicted RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 AIF1LQ9BQI0 150 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 SLC35B3Q9H1N7 401 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 MRPL35Q9NZE8 188 aaKnown RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 HLA-DRB4X5D2U9 266 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 UHRF1BP1LA0JNW5 1464 aa0.13□□□□□ -2.39
SCFD1-216ENST00000555550 ZNF142P52746 1687 aaPredicted RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 MUC22E2RYF6 1773 aaPredicted RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 BLMP54132 1417 aaPredicted RBP0.13□□□□□ -2.39
SCFD1-216ENST00000555550 LAMB1P07942 1786 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms