RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ESRGQ1W209 222 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 AKR1C8PQ5T2L2 129 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 Q9H8V8 135 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 SDF2L1Q9HCN8 221 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 PSG8Q9UQ74 426 aa11.09□□□□□ -0.63
CCDC88C-209ENST00000554872 HMSDA8MTL9 139 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 F6UZH7 168 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 M0R2P5 195 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 PAX4O43316 350 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 FLI1Q01543 452 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 KCNRGQ8N5I3 272 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 ICOSQ9Y6W8 199 aa11.08□□□□□ -0.64
CCDC88C-209ENST00000554872 TRAV4A0A0B4J268 109 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 TYMSP04818 313 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 PFN1P07737 140 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 SAPCD1Q5SSQ6 148 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 C6orf223Q8N319 242 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 TCEAL7Q9BRU2 100 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 HHLA3Q9XRX5 114 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 ARL2-SNX15V9GYD0 113 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 PKD1P98161 4303 aa11.07□□□□□ -0.64
CCDC88C-209ENST00000554872 ZFP69Q49AA0 526 aa11.06□□□□□ -0.64
CCDC88C-209ENST00000554872 SMUG1Q53HV7 270 aa11.06□□□□□ -0.64
CCDC88C-209ENST00000554872 HIST1H2BAQ96A08 127 aa11.06□□□□□ -0.64
CCDC88C-209ENST00000554872 PTH2Q96A98 100 aa11.06□□□□□ -0.64
CCDC88C-209ENST00000554872 NAGKQ9UJ70 344 aa11.06□□□□□ -0.64
CCDC88C-209ENST00000554872 FAM74A7A6NL05 159 aa11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 GNRH2O43555 120 aa11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 IGHV3-53P01767 116 aa11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 FHITP49789 147 aa11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 ZNF80P51504 273 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 MRPL23Q16540 153 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 COX8CQ7Z4L0 72 aa11.05□□□□□ -0.64
CCDC88C-209ENST00000554872 A0A0D9SG52 128 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 MAP1LC3B2A6NCE7 125 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 UMAD1C9J7I0 102 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 PEX7O00628 323 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 CIDEAO60543 219 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 GCGP01275 180 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 ORM1P02763 201 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 SEC11BP0C7V7 166 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 PPT1P50897 306 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 ZNF479Q96JC4 524 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 SGK494Q96LW2 274 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 C9orf85Q96MD7 179 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 C8orf49Q96NF6 230 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 MAP1LC3BQ9GZQ8 125 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 C11orf21Q9P2W6 132 aa11.04□□□□□ -0.64
CCDC88C-209ENST00000554872 TRGV4A0A0C4DH28 118 aa11.03□□□□□ -0.64
CCDC88C-209ENST00000554872 PIK3CD-AS1Q5SR53 167 aa11.03□□□□□ -0.64
CCDC88C-209ENST00000554872 PRNTQ86SH4 94 aa11.03□□□□□ -0.64
CCDC88C-209ENST00000554872 OR11H4Q8NGC9 324 aa11.03□□□□□ -0.64
CCDC88C-209ENST00000554872 KRTAP1-5Q9BYS1 174 aa11.03□□□□□ -0.64
CCDC88C-209ENST00000554872 TRBV6-1A0A0K0K1D8 114 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 SMLR1H3BR10 107 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 IFNA7P01567 189 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 SFTA3P0C7M3 94 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 NEGR1Q7Z3B1 354 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 Q86TA4 180 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 STOML3Q8TAV4 291 aa11.02□□□□□ -0.65
CCDC88C-209ENST00000554872 C9JCJ5 164 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 K7EQD1 137 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 BCL2L11O43521 198 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 FGF8P55075 233 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 DPPA3Q6W0C5 159 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 OR4C5Q8NGB2 326 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 MBD3L1Q8WWY6 194 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 ZFP30Q9Y2G7 519 aa11.01□□□□□ -0.65
CCDC88C-209ENST00000554872 HERC2O95714 4834 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 K7EP13 123 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 SIVA1O15304 175 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 MED14OSP0DP75 135 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 GATA1P15976 413 aaPredicted RBP11□□□□□ -0.65
CCDC88C-209ENST00000554872 TIRAPP58753 221 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 UBE2G2P60604 165 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 EIF5AP63241 154 aaKnown RBP11□□□□□ -0.65
CCDC88C-209ENST00000554872 LYPD5Q6UWN5 251 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 SH2D6Q7Z4S9 175 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 PCNPQ8WW12 178 aaKnown RBP11□□□□□ -0.65
CCDC88C-209ENST00000554872 FMC1Q96HJ9 113 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 LINC00479Q96M42 142 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 DNAH11Q96DT5 4516 aa11□□□□□ -0.65
CCDC88C-209ENST00000554872 TRAV34A0A0B4J273 112 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 KANTRA0A1W2PQU2 76 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 FABP5P3A8MUU1 101 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 NXPH4O95158 308 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 RNASE3P12724 160 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 SRIP30626 198 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 TNP2Q05952 138 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 ZNF876PQ49A33 203 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 DNLZQ5SXM8 178 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 TXNDC17Q9BRA2 123 aa10.99□□□□□ -0.65
CCDC88C-209ENST00000554872 RS1O15537 224 aa10.98□□□□□ -0.65
CCDC88C-209ENST00000554872 GYPEP15421 78 aa10.98□□□□□ -0.65
CCDC88C-209ENST00000554872 CFAP126Q5VTH2 177 aa10.98□□□□□ -0.65
CCDC88C-209ENST00000554872 IGKV3D-20A0A0C4DH25 116 aa10.97□□□□□ -0.65
CCDC88C-209ENST00000554872 TRBV6-4A0A1B0GX49 114 aa10.97□□□□□ -0.65
CCDC88C-209ENST00000554872 LGALSLQ3ZCW2 172 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-209ENST00000554872 ZNF471Q9BX82 626 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-209ENST00000554872 IL36BQ9NZH7 164 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms