RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 C6orf62Q9GZU0 229 aaPredicted RBP2.44□□□□□ -2.02
LIMA1-210ENST00000552045 LAMTOR3Q9UHA4 124 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 ARAP2Q8WZ64 1704 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 PLXNB2O15031 1838 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 NOTCH1P46531 2555 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 TRAV12-1A0A0B4J245 112 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 BRS3P32247 399 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 C1orf140Q5VVS0 124 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 ROCK2O75116 1388 aaKnown RBP2.43□□□□□ -2.02
LIMA1-210ENST00000552045 ACACAQ13085 2346 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 JMJD1CQ15652 2540 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 ATRQ13535 2644 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 OTOGQ6ZRI0 2925 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 LOC285556D6RIA3 1793 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 CDK5RAP2Q96SN8 1893 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 URB1O60287 2271 aaKnown RBP2.43□□□□□ -2.02
LIMA1-210ENST00000552045 BOD1L1Q8NFC6 3051 aa2.43□□□□□ -2.02
LIMA1-210ENST00000552045 SIP14410 1827 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 APC2O95996 2303 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 FLNCQ14315 2725 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 STAB1Q9NY15 2570 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 ODAMA1E959 279 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 TMBIM6P55061 237 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 ARPP19P56211 112 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 RTL8BQ17RB0 113 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 DEFB113Q30KQ7 82 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 CROCCP2Q86T23 111 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 TAC4Q86UU9 113 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 Q8N2B8 174 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 SFT2D1Q8WV19 159 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 CARD19Q96LW7 228 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 NAA38Q9BRA0 125 aaKnown RBP2.42□□□□□ -2.02
LIMA1-210ENST00000552045 NDUFAF1Q9Y375 327 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 MED12LQ86YW9 2145 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 ADGRG4Q8IZF6 3080 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 PSME4Q14997 1843 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 USP9YO00507 2555 aaPredicted RBP2.42□□□□□ -2.02
LIMA1-210ENST00000552045 COL6A6A6NMZ7 2263 aa2.42□□□□□ -2.02
LIMA1-210ENST00000552045 E7EQ34 232 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 RNASE3P12724 160 aaKnown RBP2.41□□□□□ -2.02
LIMA1-210ENST00000552045 PLCXD2Q0VAA5 305 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 MSMO1Q15800 293 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 PATE2Q6UY27 113 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 AKAP14Q86UN6 197 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 RMND5BQ96G75 393 aaPredicted RBP2.41□□□□□ -2.02
LIMA1-210ENST00000552045 CCDC32Q9BV29 185 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 NUBP2Q9Y5Y2 271 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 AHCTF1Q8WYP5 2266 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 ANKHD1Q8IWZ3 2542 aaKnown RBP2.41□□□□□ -2.02
LIMA1-210ENST00000552045 LRBAP50851 2863 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 ANKRD36CQ5JPF3 1778 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 CCDC168Q8NDH2 2452 aa2.41□□□□□ -2.02
LIMA1-210ENST00000552045 ITPR2Q14571 2701 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 TRAV5A0A0B4J249 113 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 MRPS14O60783 128 aaKnown RBP2.4□□□□□ -2.03
LIMA1-210ENST00000552045 KRTAP12-4P60329 112 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 PRR15Q8IV56 129 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 REG4Q9BYZ8 158 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 FANCMQ8IYD8 2048 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 SPENQ96T58 3664 aaKnown RBP2.4□□□□□ -2.03
LIMA1-210ENST00000552045 ATMQ13315 3056 aa2.4□□□□□ -2.03
LIMA1-210ENST00000552045 RAB4BP61018 213 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 CDK5R1Q15078 307 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 C12orf29Q8N999 325 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 C15orf53Q8NAA6 179 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 GRPEL2Q8TAA5 225 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 BORCS8Q96FH0 119 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 ZNF714Q96N38 554 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 RNF11Q9Y3C5 154 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 SOX21Q9Y651 276 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-210ENST00000552045 HIVEP3Q5T1R4 2406 aa2.39□□□□□ -2.03
LIMA1-210ENST00000552045 MYO5AQ9Y4I1 1855 aaKnown RBP2.39□□□□□ -2.03
LIMA1-210ENST00000552045 MYOFQ9NZM1 2061 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 K7ERJ3 54 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 DHFRP00374 187 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 FLNAP21333 2647 aaKnown RBP2.38□□□□□ -2.03
LIMA1-210ENST00000552045 ROMO1P60602 79 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 TOMM20LQ6UXN7 152 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 OR2T35Q8NGX2 323 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 RETNLBQ9BQ08 111 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 EFCAB11Q9BUY7 163 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 OTORQ9NRC9 128 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 ASB4Q9Y574 426 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 LY96Q9Y6Y9 160 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 A0A1B0GUL6 1792 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 CELSR1Q9NYQ6 3014 aa2.38□□□□□ -2.03
LIMA1-210ENST00000552045 MYO7AQ13402 2215 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 HIVEP1P15822 2718 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 TRDV1A0A1B0GX56 115 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 HIST1H2BKO60814 126 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 HIST1H2BJP06899 126 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 TMEM128Q5BJH2 165 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 PHF5AQ7RTV0 110 aaKnown RBP2.37□□□□□ -2.03
LIMA1-210ENST00000552045 OR4C6Q8NH72 309 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 ISOC1Q96CN7 298 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 OR2H1Q9GZK4 316 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 CACYBPQ9HB71 228 aaKnown RBP2.37□□□□□ -2.03
LIMA1-210ENST00000552045 MED9Q9NWA0 146 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 Q9Y3F1 56 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 PDZD2O15018 2839 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms