RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 LINC00862A6NCI5 91 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 K7EN84 100 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 M0R036 132 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 GNRH2O43555 120 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 ORM1P02763 201 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 OR5I1Q13606 314 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 ZNF493Q6ZR52 646 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 EDA2RQ9HAV5 297 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 SDF2L1Q9HCN8 221 aa15.2■□□□□ 0.02
VPS29-206ENST00000549578 TMEM189A5PLL7 270 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 TYMSP04818 313 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 SFTA3P0C7M3 94 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 SOHLH1Q5JUK2 328 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 C11orf72Q8NBR9 251 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 KCNS1Q96KK3 526 aa15.19■□□□□ 0.02
VPS29-206ENST00000549578 GSN-AS1Q9NRJ2 163 aa15.18■□□□□ 0.02
VPS29-206ENST00000549578 MDFICQ9P1T7 246 aa15.18■□□□□ 0.02
VPS29-206ENST00000549578 CELA1Q9UNI1 258 aa15.18■□□□□ 0.02
VPS29-206ENST00000549578 TRGV11A0A075B6L2 103 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 B4DEV8 164 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 FAM74A3Q4VXF1 159 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 TMSB15BA0A087X1C1 80 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 KRBOX1C9JBD0 128 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 LINC01559Q495D7 138 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 UQCC3Q6UW78 93 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 LINC01551Q86U37 167 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 LY96Q9Y6Y9 160 aa15.17■□□□□ 0.02
VPS29-206ENST00000549578 IGHV3-16A0A0C4DH30 117 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 C19orf71A6NCJ1 209 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 SNURFLB1AK76 121 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 RPL19P84098 196 aaKnown RBP15.16■□□□□ 0.02
VPS29-206ENST00000549578 ZNF415Q09FC8 603 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 IBA57Q5T440 356 aaKnown RBP15.16■□□□□ 0.02
VPS29-206ENST00000549578 FAM222AQ5U5X8 452 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 DAZAP1Q96EP5 407 aaKnown RBP15.16■□□□□ 0.02
VPS29-206ENST00000549578 NOP10Q9NPE3 64 aaKnown RBP15.16■□□□□ 0.02
VPS29-206ENST00000549578 BIN3Q9NQY0 253 aa15.16■□□□□ 0.02
VPS29-206ENST00000549578 TCL1AP56279 114 aa15.15■□□□□ 0.02
VPS29-206ENST00000549578 TMEM241Q24JQ0 296 aa15.15■□□□□ 0.02
VPS29-206ENST00000549578 DKK2Q9UBU2 259 aa15.15■□□□□ 0.02
VPS29-206ENST00000549578 TIMM8BQ9Y5J9 83 aaPredicted RBP15.15■□□□□ 0.02
VPS29-206ENST00000549578 GRIFINA4D1Z8 144 aa15.14■□□□□ 0.01
VPS29-206ENST00000549578 ZNF575Q86XF7 245 aa15.14■□□□□ 0.01
VPS29-206ENST00000549578 IL17DQ8TAD2 202 aa15.14■□□□□ 0.01
VPS29-206ENST00000549578 RNASE7Q9H1E1 156 aaKnown RBP15.14■□□□□ 0.01
VPS29-206ENST00000549578 NAT8Q9UHE5 227 aa15.14■□□□□ 0.01
VPS29-206ENST00000549578 SPART-AS1P0CW21 52 aa15.13■□□□□ 0.01
VPS29-206ENST00000549578 CXorf65A6NEN9 183 aa15.12■□□□□ 0.01
VPS29-206ENST00000549578 P01737 135 aa15.12■□□□□ 0.01
VPS29-206ENST00000549578 RPL23P62829 140 aaKnown RBP15.12■□□□□ 0.01
VPS29-206ENST00000549578 NUDT10Q8NFP7 164 aa15.12■□□□□ 0.01
VPS29-206ENST00000549578 C11orf45Q8TAV5 145 aa15.12■□□□□ 0.01
VPS29-206ENST00000549578 NUDT11Q96G61 164 aa15.12■□□□□ 0.01
VPS29-206ENST00000549578 NANOS2P60321 138 aaKnown RBP15.12■□□□□ 0.01
VPS29-206ENST00000549578 DAZ2Q13117 558 aaKnown RBP15.12■□□□□ 0.01
VPS29-206ENST00000549578 TMEM218A2RU14 115 aa15.11■□□□□ 0.01
VPS29-206ENST00000549578 LYRM9A8MSI8 78 aa15.11■□□□□ 0.01
VPS29-206ENST00000549578 RNASE3P12724 160 aaKnown RBP15.11■□□□□ 0.01
VPS29-206ENST00000549578 S100A4P26447 101 aaKnown RBP15.11■□□□□ 0.01
VPS29-206ENST00000549578 ASIPP42127 132 aa15.11■□□□□ 0.01
VPS29-206ENST00000549578 ADIRFQ15847 76 aa15.11■□□□□ 0.01
VPS29-206ENST00000549578 OR2D3Q8NGH3 330 aa15.11■□□□□ 0.01
VPS29-206ENST00000549578 H3BVH4 76 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 DEFB130BP0DP73 79 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 DEFB130AP0DP74 79 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 ADCYAP1P18509 176 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 ERVFC1-1P60608 527 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 C12orf74Q32Q52 190 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 Q6ZTI0 123 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 ISOC2Q96AB3 205 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 C9orf85Q96MD7 179 aa15.09■□□□□ 0.01
VPS29-206ENST00000549578 MRPL16Q9NX20 251 aaKnown RBP15.09■□□□□ 0.01
VPS29-206ENST00000549578 TRGV1A0A0A0MS02 117 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 TEX48A0A1B0GUV7 120 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 SPINK4O60575 86 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 GZMBP10144 247 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 FAM231DQ6ZW35 169 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 WWC2-AS2Q96NR7 200 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 SPXQ9BT56 116 aa15.08■□□□□ 0.01
VPS29-206ENST00000549578 RPP21Q9H633 154 aaKnown RBP15.08■□□□□ 0.01
VPS29-206ENST00000549578 GAGE12BA1L429 117 aa15.07■□□□□ 0
VPS29-206ENST00000549578 GAGE7O76087 117 aa15.07■□□□□ 0
VPS29-206ENST00000549578 GAGE12FP0CL80 117 aa15.07■□□□□ 0
VPS29-206ENST00000549578 GAGE12GP0CL81 117 aa15.07■□□□□ 0
VPS29-206ENST00000549578 GAGE12IP0CL82 117 aa15.07■□□□□ 0
VPS29-206ENST00000549578 DAD1P61803 113 aa15.07■□□□□ 0
VPS29-206ENST00000549578 DNLZQ5SXM8 178 aa15.07■□□□□ 0
VPS29-206ENST00000549578 F8W036 122 aa15.07■□□□□ 0
VPS29-206ENST00000549578 CXCL1P09341 107 aa15.07■□□□□ 0
VPS29-206ENST00000549578 ARMS2P0C7Q2 107 aa15.07■□□□□ 0
VPS29-206ENST00000549578 Q6ZTC4 211 aa15.07■□□□□ 0
VPS29-206ENST00000549578 IL36BQ9NZH7 164 aa15.07■□□□□ 0
VPS29-206ENST00000549578 M0R2P5 195 aa15.06■□□□□ 0
VPS29-206ENST00000549578 GATCO43716 136 aaKnown RBP15.06■□□□□ 0
VPS29-206ENST00000549578 LINC00612Q8N6U2 182 aa15.06■□□□□ 0
VPS29-206ENST00000549578 MUC4Q99102 2169 aa15.06■□□□□ 0
VPS29-206ENST00000549578 RPS20P60866 119 aaKnown RBP15.05■□□□□ -0
VPS29-206ENST00000549578 LGALS9BQ3B8N2 356 aa15.05■□□□□ -0
VPS29-206ENST00000549578 SFRP2Q96HF1 295 aa15.05■□□□□ -0
VPS29-206ENST00000549578 OSTCQ9NRP0 149 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms