RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 MED9Q9NWA0 146 aa8.77□□□□□ -1.01
PTCH1-218ENST00000548945 HHLA3Q9XRX5 114 aa8.77□□□□□ -1.01
PTCH1-218ENST00000548945 TRAV9-2A0A087WT02 112 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 TEX46H3BTG2 121 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 H2AFB1P0C5Y9 115 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 PYYP10082 97 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 FHITP49789 147 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 LYPD5Q6UWN5 251 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 EXOC3-AS1Q8N2X6 119 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 BLNKQ8WV28 456 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 ACTR3CQ9C0K3 210 aaPredicted RBP8.76□□□□□ -1.01
PTCH1-218ENST00000548945 ZNF492Q9P255 531 aa8.76□□□□□ -1.01
PTCH1-218ENST00000548945 CTXND1A0A1B0GTU2 59 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 CDC34P49427 236 aaPredicted RBP8.75□□□□□ -1.01
PTCH1-218ENST00000548945 XGP55808 180 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 ZNF415Q09FC8 603 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 FHL2Q14192 279 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 ICAM4Q14773 271 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 PRR9Q5T870 116 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 FAM122CQ6P4D5 195 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 NEGR1Q7Z3B1 354 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 IQCF2Q8IXL9 164 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 LYPD6BQ8NI32 183 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 SLC25A2Q9BXI2 301 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 MRPL32Q9BYC8 188 aaKnown RBP8.75□□□□□ -1.01
PTCH1-218ENST00000548945 MRPL16Q9NX20 251 aaKnown RBP8.75□□□□□ -1.01
PTCH1-218ENST00000548945 TP53TG3Q9ULZ0 132 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 LY96Q9Y6Y9 160 aa8.75□□□□□ -1.01
PTCH1-218ENST00000548945 FLG2Q5D862 2391 aaPredicted RBP8.75□□□□□ -1.01
PTCH1-218ENST00000548945 FAT1Q14517 4588 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 MYCBP2O75592 4640 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 IGKV2-40A0A087WW87 121 aaPredicted RBP8.74□□□□□ -1.01
PTCH1-218ENST00000548945 TRAV1-1A0A0B4J248 108 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 A0A1W2PPV4 95 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 IGKV2D-40P01614 121 aaPredicted RBP8.74□□□□□ -1.01
PTCH1-218ENST00000548945 IGHV3-53P01767 116 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 NBEAP1P0C6P0 100 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 ZNF138P52744 262 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 ZNF726P1Q15940 193 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 COMMD7Q86VX2 200 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 SFT2D1Q8WV19 159 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 MBD3L1Q8WWY6 194 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 FAM167A-AS1Q96KT0 104 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 C8orf49Q96NF6 230 aa8.74□□□□□ -1.01
PTCH1-218ENST00000548945 A0A087WTM6 91 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 RBAKDNA6NC62 111 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 MAP1LC3B2A6NCE7 125 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 INAFM2P0DMQ5 153 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 GCSAMLQ5JQS6 135 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 RAB24Q969Q5 203 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 SPXQ9BT56 116 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 MAP1LC3BQ9GZQ8 125 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 OR51M1Q9H341 326 aa8.73□□□□□ -1.01
PTCH1-218ENST00000548945 TRGV4A0A0C4DH28 118 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 K7EQD1 137 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 ORM1P02763 201 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 DNAH10OSP0CZ25 163 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 EVI2AP22794 236 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 SRIP30626 198 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 RASL10AQ92737 203 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 FRZBQ92765 325 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 MSRB1Q9NZV6 116 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 LENEPQ9Y5L5 61 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 TNFRSF18Q9Y5U5 241 aa8.72□□□□□ -1.01
PTCH1-218ENST00000548945 RAB19A4D1S5 217 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 CSN1S1P47710 185 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 TAS2R45P59539 299 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 Q5VSD8 79 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 Q6AWC8 147 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 Q6ZQT7 251 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 MIR17HGQ75NE6 70 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 SLC7A5P1Q8MH63 180 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 C10orf126Q8N4M7 172 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 FXYD5Q96DB9 178 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 TXNDC17Q9BRA2 123 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 PAXXQ9BUH6 204 aa8.71□□□□□ -1.02
PTCH1-218ENST00000548945 A0A1B0GV50 99 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 CXorf1O96002 111 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 STAG3L2P0CL84 134 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 STAG3L3P0CL85 134 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 FUSP35637 526 aaKnown RBP eCLIP8.7□□□□□ -1.02
PTCH1-218ENST00000548945 KRTAP10-1P60331 282 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 KHDC3LQ587J8 217 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 SH2D6Q7Z4S9 175 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 Q8TAT8 98 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 MDFICQ9P1T7 246 aa8.7□□□□□ -1.02
PTCH1-218ENST00000548945 TRGV11A0A075B6L2 103 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 C9JCJ5 164 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 HMGB3O15347 200 aaKnown RBP8.69□□□□□ -1.02
PTCH1-218ENST00000548945 IFNA1P01562 189 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 OR10J4P0C629 311 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 GYPEP15421 78 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 PPT1P50897 306 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 FGF8P55075 233 aaPredicted RBP8.69□□□□□ -1.02
PTCH1-218ENST00000548945 TIRAPP58753 221 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 TDRG1Q3Y452 100 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 UQCC3Q6UW78 93 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 PQLC2Q6ZP29 291 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 WFDC10BQ8IUB3 73 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 ZNF479Q96JC4 524 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms