RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 TM4SF20Q53R12 229 aa11.61□□□□□ -0.55
CHFR-223ENST00000544268 MAPK1IP1LQ8NDC0 245 aa11.61□□□□□ -0.55
CHFR-223ENST00000544268 B4DSR2 109 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 NDUFA3O95167 84 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 RIGQ13278 110 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 ETDBQ3ZM63 59 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 PSMG4Q5JS54 123 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 PIFOQ8TCI5 191 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 TMSB15BA0A087X1C1 80 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 ARMS2P0C7Q2 107 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 FAM106CPP0CH98 169 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 HLA-DMBP28068 263 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 IFI27P40305 119 aaPredicted RBP11.6□□□□□ -0.55
CHFR-223ENST00000544268 FAM106AQ4KMX7 169 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 SH2D6Q7Z4S9 175 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 NPBQ8NG41 125 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 ZNF414Q96IQ9 312 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 TMEM14CQ9P0S9 112 aa11.6□□□□□ -0.55
CHFR-223ENST00000544268 TRAV40A0A0B4J280 105 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 B5MCH6 92 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 ARPC1AQ92747 370 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 IGLV11-55A0A075B6I3 123 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 RNF223E7ERA6 249 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 LOXL1Q08397 574 aaPredicted RBP11.59□□□□□ -0.55
CHFR-223ENST00000544268 BRD3OSQ6XYD6 125 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 ZNF502Q8TBZ5 544 aa11.59□□□□□ -0.55
CHFR-223ENST00000544268 IGKV2-40A0A087WW87 121 aaPredicted RBP11.58□□□□□ -0.56
CHFR-223ENST00000544268 IGHV1-69DA0A0B4J2H0 117 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 K7ERJ3 54 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 IGKV2D-40P01614 121 aaPredicted RBP11.58□□□□□ -0.56
CHFR-223ENST00000544268 IGHV1-69P01742 117 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 EGR2P11161 476 aaPredicted RBP11.58□□□□□ -0.56
CHFR-223ENST00000544268 LRRC75A-AS1Q8N1F1 130 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 ZNF469Q96JG9 3925 aaPredicted RBP11.58□□□□□ -0.56
CHFR-223ENST00000544268 LINC01548A6NM66 108 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 IGHV4-38-2P0DP08 117 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 ATP5G2Q06055 141 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 TTC9CQ8N5M4 171 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 Q8N6K4 173 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 TM2D2Q9BX73 214 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 CSPG4Q6UVK1 2322 aa11.58□□□□□ -0.56
CHFR-223ENST00000544268 CREBBPQ92793 2442 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 WI2-2373I1.2A0A1W2PRP0 233 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 IGLL5B9A064 214 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 EBI3Q14213 229 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 Q8TAT8 98 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 AVPP01185 164 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 IFI27L1Q96BM0 104 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 CHAC1Q9BUX1 264 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 CCDC168Q8NDH2 2452 aa11.57□□□□□ -0.56
CHFR-223ENST00000544268 ITPR2Q14571 2701 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 IGHV3OR16-13A0A075B7E8 117 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 IGHV3-74A0A0B4J1X5 117 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 IGHV3-66A0A0C4DH42 116 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 H3BMG7 143 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 M0QXV9 152 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 HBDP02042 147 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 GAGE13Q4V321 117 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 LINC01356Q8N9X3 169 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 NHP2Q9NX24 153 aaKnown RBP11.56□□□□□ -0.56
CHFR-223ENST00000544268 IGHV7-81A0A0B4J1V7 117 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 C8orf86Q6ZUL3 223 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 KRTAP1-3Q8IUG1 177 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 C21orf62Q9NYP8 219 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 CYSLTR1Q9Y271 337 aa11.56□□□□□ -0.56
CHFR-223ENST00000544268 PRRC2AP48634 2157 aaKnown RBP11.55□□□□□ -0.56
CHFR-223ENST00000544268 CR1P17927 2039 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 CEND1Q8N111 149 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 Q96MF0 132 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 PRO0461Q9UI25 63 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 UNC79Q9P2D8 2635 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 LOC389332A0A1B0GUA5 103 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 CTSGP08311 255 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 ECSCRQ19T08 205 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 SMAD5-AS1Q9Y6J3 95 aa11.55□□□□□ -0.56
CHFR-223ENST00000544268 INSL3P51460 131 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 MFAP4P55083 255 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 U3KQK5 164 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 G3V318 75 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 TGFAP01135 160 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 ZNF493Q6ZR52 646 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 Q8N9W7 124 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 TMEM75Q8N9X5 138 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 SRSF8Q9BRL6 282 aaKnown RBP11.54□□□□□ -0.56
CHFR-223ENST00000544268 DKK2Q9UBU2 259 aa11.54□□□□□ -0.56
CHFR-223ENST00000544268 PDZD2O15018 2839 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 IGHV3-49A0A0A0MS15 119 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 TMEM213A2RRL7 107 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 NPIPB5A8MRT5 1133 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 SPINK8P0C7L1 97 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 VPREB3Q9UKI3 123 aa11.53□□□□□ -0.56
CHFR-223ENST00000544268 IGHG4P01861 327 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 ZNF80P51504 273 aaPredicted RBP11.52□□□□□ -0.56
CHFR-223ENST00000544268 FXYD7P58549 80 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 PRELID3AQ96N28 172 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 C20orf78Q9BR46 151 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 VCX2Q9H322 139 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 ITPR3Q14573 2671 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 HECTD1Q9ULT8 2610 aa11.52□□□□□ -0.56
CHFR-223ENST00000544268 TRBV25-1A0A075B6N4 114 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms