RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TMEM183AQ8IXX5 376 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 SLC25A29Q8N8R3 303 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 LYPD6BQ8NI32 183 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 GPX8Q8TED1 209 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 ODF3Q96PU9 254 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 PRADC1Q9BSG0 188 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 AGPAT4-IT1Q9H0P7 198 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 ARV1Q9H2C2 271 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 NAA60Q9H7X0 242 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 C8orf4Q9NR00 106 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 PXMP4Q9Y6I8 212 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 FSIP2Q5CZC0 6907 aa3.01□□□□□ -1.93
LIMS1-214ENST00000542845 A0A087WYN8 130 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 KLLNB2CW77 178 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 H3BP45 60 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 H3BQ15 152 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 H7C1H1 209 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 M0R3E3 92 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 TAAR5O14804 337 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 MRPS12O15235 138 aaKnown RBP3□□□□□ -1.93
LIMS1-214ENST00000542845 HLA-DQA1P01909 254 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 PRSS1P07477 247 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 CHTF8P0CG12 524 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 GATA1P15976 413 aaPredicted RBP3□□□□□ -1.93
LIMS1-214ENST00000542845 CXCL2P19875 107 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 CCR6P51684 374 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 ATP5IP56385 69 aaPredicted RBP3□□□□□ -1.93
LIMS1-214ENST00000542845 RRAS2P62070 204 aaPredicted RBP3□□□□□ -1.93
LIMS1-214ENST00000542845 RPL24P83731 157 aaKnown RBP3□□□□□ -1.93
LIMS1-214ENST00000542845 KRTAP15-1Q3LI76 137 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 SPANXN5Q5MJ07 72 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 TMEM78Q5T7P6 136 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 PRR9Q5T870 116 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 PATE2Q6UY27 113 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 SDIM1Q6ZPB5 146 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 LYZL2Q7Z4W2 148 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 C9orf163Q8N9P6 203 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 TERB2Q8NHR7 220 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 RAB2BQ8WUD1 216 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 RASL10AQ92737 203 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 SRRQ9GZT4 340 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 CACFD1Q9UGQ2 172 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 NAGKQ9UJ70 344 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 RABL2BQ9UNT1 228 aa3□□□□□ -1.93
LIMS1-214ENST00000542845 IGKV2-40A0A087WW87 121 aaPredicted RBP2.99□□□□□ -1.93
LIMS1-214ENST00000542845 FBLL1A6NHQ2 334 aaKnown RBP2.99□□□□□ -1.93
LIMS1-214ENST00000542845 GOSR2O14653 212 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 GNRH2O43555 120 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 IGKV2D-40P01614 121 aaPredicted RBP2.99□□□□□ -1.93
LIMS1-214ENST00000542845 TGFBR1P36897 503 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 UBE2MP61081 183 aaKnown RBP2.99□□□□□ -1.93
LIMS1-214ENST00000542845 SSTP61278 116 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 GAGE5Q13069 117 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 RAB31Q13636 194 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 KCNIP4Q6PIL6 250 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 CD164L2Q6UWJ8 174 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 FAM159AQ6UWV7 190 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 LHFPL1Q86WI0 220 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 RTBDNQ9BSG5 229 aaPredicted RBP2.99□□□□□ -1.93
LIMS1-214ENST00000542845 FUNDC2Q9BWH2 189 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 VCXQ9H320 206 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 OR51M1Q9H341 326 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 COMMD3Q9UBI1 195 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 RNF24Q9Y225 148 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 KCNIP3Q9Y2W7 256 aa2.99□□□□□ -1.93
LIMS1-214ENST00000542845 A0A087WX48 190 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 TRAV26-2A0A0B4J265 109 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 PGPA6NDG6 321 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 ANKRD65E5RJM6 399 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 TMEM262E9PQX1 116 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 M0R2P5 195 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 AGPAT2O15120 278 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 COX7A2P2O60397 106 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 RAB3DO95716 219 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SEC11BP0C7V7 166 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SELENOTP62341 195 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 POLR2GP62487 172 aaKnown RBP eCLIP2.98□□□□□ -1.93
LIMS1-214ENST00000542845 HERV-K104P63124 156 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 PRR3P79522 188 aaKnown RBP2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SLC38A11Q08AI6 406 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 GAGE6Q13070 117 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 RHOHQ15669 191 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 LRRC37A5PQ49AS3 106 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 C10orf113Q5VZT2 155 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 FAAP20Q6NZ36 180 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SPINK6Q6UWN8 80 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 NIT1Q86X76 327 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 EXOC3-AS1Q8N2X6 119 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 ZFAND2AQ8N6M9 145 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 YIPF6Q96EC8 236 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 FAM19A4Q96LR4 140 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SOSTQ9BQB4 213 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 TPPP3Q9BW30 176 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 SH3BGRL3Q9H299 93 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 VAX2Q9UIW0 290 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 TIMM9Q9Y5J7 89 aa2.98□□□□□ -1.93
LIMS1-214ENST00000542845 IGHV3-64A0A075B6Q5 118 aa2.97□□□□□ -1.93
LIMS1-214ENST00000542845 A0A0U1RRA0 63 aa2.97□□□□□ -1.93
LIMS1-214ENST00000542845 TRBV6-4A0A1B0GX49 114 aa2.97□□□□□ -1.93
LIMS1-214ENST00000542845 FAM231BA6NCW3 169 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms