RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAM74A3Q4VXF1 159 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 RNASE8Q8TDE3 154 aaKnown RBP12.31□□□□□ -0.44
LIG1-204ENST00000542460 BIN3Q9NQY0 253 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 C11orf21Q9P2W6 132 aa12.31□□□□□ -0.44
LIG1-204ENST00000542460 EMP1P54849 157 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 PRR27Q6MZM9 219 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 OCC1Q8TAD7 63 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 EDA2RQ9HAV5 297 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 SDF2L1Q9HCN8 221 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 TP53TG3Q9ULZ0 132 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 LY96Q9Y6Y9 160 aa12.3□□□□□ -0.44
LIG1-204ENST00000542460 TRGV11A0A075B6L2 103 aa12.29□□□□□ -0.44
LIG1-204ENST00000542460 ORM1P02763 201 aa12.29□□□□□ -0.44
LIG1-204ENST00000542460 SOHLH1Q5JUK2 328 aa12.29□□□□□ -0.44
LIG1-204ENST00000542460 UQCC3Q6UW78 93 aa12.29□□□□□ -0.44
LIG1-204ENST00000542460 PLAC8L1A1L4L8 177 aa12.28□□□□□ -0.44
LIG1-204ENST00000542460 IBA57Q5T440 356 aaKnown RBP12.28□□□□□ -0.44
LIG1-204ENST00000542460 IGKV3D-20A0A0C4DH25 116 aa12.27□□□□□ -0.44
LIG1-204ENST00000542460 SNURFLB1AK76 121 aa12.27□□□□□ -0.44
LIG1-204ENST00000542460 KRBOX1C9JBD0 128 aa12.27□□□□□ -0.44
LIG1-204ENST00000542460 GNRH2O43555 120 aa12.27□□□□□ -0.44
LIG1-204ENST00000542460 C11orf72Q8NBR9 251 aa12.27□□□□□ -0.44
LIG1-204ENST00000542460 DAZAP1Q96EP5 407 aaKnown RBP12.27□□□□□ -0.44
LIG1-204ENST00000542460 TIMM8BQ9Y5J9 83 aaPredicted RBP12.27□□□□□ -0.44
LIG1-204ENST00000542460 STAB2Q8WWQ8 2551 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 B4DEV8 164 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 TYMSP04818 313 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 SFTA3P0C7M3 94 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 TMEM241Q24JQ0 296 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 LINC01559Q495D7 138 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 GSN-AS1Q9NRJ2 163 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 MDFICQ9P1T7 246 aa12.27□□□□□ -0.45
LIG1-204ENST00000542460 TEX48A0A1B0GUV7 120 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 C19orf71A6NCJ1 209 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 K7EN84 100 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 M0R036 132 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 SPART-AS1P0CW21 52 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 ZNF415Q09FC8 603 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 OR5I1Q13606 314 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 DKK2Q9UBU2 259 aa12.26□□□□□ -0.45
LIG1-204ENST00000542460 IGHV3-16A0A0C4DH30 117 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 CXorf65A6NEN9 183 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 LYRM9A8MSI8 78 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 TCL1AP56279 114 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 DAZ2Q13117 558 aaKnown RBP12.25□□□□□ -0.45
LIG1-204ENST00000542460 FAM222AQ5U5X8 452 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 LINC01551Q86U37 167 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 NOP10Q9NPE3 64 aaKnown RBP12.25□□□□□ -0.45
LIG1-204ENST00000542460 NAT8Q9UHE5 227 aa12.25□□□□□ -0.45
LIG1-204ENST00000542460 IL17DQ8TAD2 202 aa12.24□□□□□ -0.45
LIG1-204ENST00000542460 C11orf45Q8TAV5 145 aa12.24□□□□□ -0.45
LIG1-204ENST00000542460 CELA1Q9UNI1 258 aa12.24□□□□□ -0.45
LIG1-204ENST00000542460 P01737 135 aa12.23□□□□□ -0.45
LIG1-204ENST00000542460 SPXQ9BT56 116 aa12.23□□□□□ -0.45
LIG1-204ENST00000542460 TMSB15BA0A087X1C1 80 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 S100A4P26447 101 aaKnown RBP12.22□□□□□ -0.45
LIG1-204ENST00000542460 ASIPP42127 132 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 DNLZQ5SXM8 178 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 NUDT10Q8NFP7 164 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 NUDT11Q96G61 164 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 WWC2-AS2Q96NR7 200 aa12.22□□□□□ -0.45
LIG1-204ENST00000542460 RPL23P62829 140 aaKnown RBP12.21□□□□□ -0.45
LIG1-204ENST00000542460 RPL19P84098 196 aaKnown RBP12.21□□□□□ -0.45
LIG1-204ENST00000542460 FAM231DQ6ZW35 169 aa12.21□□□□□ -0.45
LIG1-204ENST00000542460 ZNF575Q86XF7 245 aa12.21□□□□□ -0.45
LIG1-204ENST00000542460 RNASE7Q9H1E1 156 aaKnown RBP12.21□□□□□ -0.45
LIG1-204ENST00000542460 TMEM218A2RU14 115 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 GRIFINA4D1Z8 144 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 SPINK4O60575 86 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 CXCL1P09341 107 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 RNASE3P12724 160 aaKnown RBP12.21□□□□□ -0.46
LIG1-204ENST00000542460 ERVFC1-1P60608 527 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 LGALS9BQ3B8N2 356 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 OR2D3Q8NGH3 330 aa12.21□□□□□ -0.46
LIG1-204ENST00000542460 KMT2CQ8NEZ4 4911 aaKnown RBP12.21□□□□□ -0.46
LIG1-204ENST00000542460 XKRY2A2RUG3 117 aa12.2□□□□□ -0.46
LIG1-204ENST00000542460 NANOS2P60321 138 aaKnown RBP12.2□□□□□ -0.46
LIG1-204ENST00000542460 RPS20P60866 119 aaKnown RBP12.2□□□□□ -0.46
LIG1-204ENST00000542460 ADIRFQ15847 76 aa12.2□□□□□ -0.46
LIG1-204ENST00000542460 C9orf85Q96MD7 179 aa12.2□□□□□ -0.46
LIG1-204ENST00000542460 IL36BQ9NZH7 164 aa12.2□□□□□ -0.46
LIG1-204ENST00000542460 TRGV1A0A0A0MS02 117 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 DEFB130BP0DP73 79 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 DEFB130AP0DP74 79 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 DAD1P61803 113 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 C12orf74Q32Q52 190 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 LINC00612Q8N6U2 182 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 ISOC2Q96AB3 205 aa12.19□□□□□ -0.46
LIG1-204ENST00000542460 RPP21Q9H633 154 aaKnown RBP12.19□□□□□ -0.46
LIG1-204ENST00000542460 M0R2P5 195 aa12.18□□□□□ -0.46
LIG1-204ENST00000542460 SCO1O75880 301 aa12.18□□□□□ -0.46
LIG1-204ENST00000542460 ARMS2P0C7Q2 107 aa12.18□□□□□ -0.46
LIG1-204ENST00000542460 Q6ZTI0 123 aa12.18□□□□□ -0.46
LIG1-204ENST00000542460 OSTCQ9NRP0 149 aa12.18□□□□□ -0.46
LIG1-204ENST00000542460 GAGE12BA1L429 117 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 F8W036 122 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 H3BVH4 76 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 GATCO43716 136 aaKnown RBP12.17□□□□□ -0.46
LIG1-204ENST00000542460 GAGE7O76087 117 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 APOC3P02656 99 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms