RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 CALYQ9NYX4 217 aa8.68□□□□□ -1.02
CDH3-203ENST00000542274 VPS13CQ709C8 3753 aa8.68□□□□□ -1.02
CDH3-203ENST00000542274 EPG5Q9HCE0 2579 aa8.68□□□□□ -1.02
CDH3-203ENST00000542274 COL8A2P25067 703 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 DUTP33316 252 aaKnown RBP8.67□□□□□ -1.02
CDH3-203ENST00000542274 ZNF56Q15929 161 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 GTSCR1Q86UQ5 136 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 TMEM158Q8WZ71 300 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 PLEKHA3Q9HB20 300 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 RNF7Q9UBF6 113 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 DSCAML1Q8TD84 2053 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 TIMM23O14925 209 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 TCL1BO95988 128 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 PLAUP00749 431 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 LGALS1P09382 135 aaKnown RBP8.67□□□□□ -1.02
CDH3-203ENST00000542274 GAFA1Q96PS6 74 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 ZNF256Q9Y2P7 627 aaPredicted RBP8.67□□□□□ -1.02
CDH3-203ENST00000542274 IGKV2D-26A0A0A0MRZ7 120 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 IGKCP01834 107 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 FCER1GP30273 86 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 BRK1Q8WUW1 75 aa8.67□□□□□ -1.02
CDH3-203ENST00000542274 TET2Q6N021 2002 aaPredicted RBP8.66□□□□□ -1.02
CDH3-203ENST00000542274 Q8N1Y9 231 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 FAM168AQ92567 244 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 AKAP6Q13023 2319 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 ZFHX3Q15911 3703 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 FLNCQ14315 2725 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 HOXA3O43365 443 aaPredicted RBP8.66□□□□□ -1.02
CDH3-203ENST00000542274 PRIMA1Q86XR5 153 aa8.66□□□□□ -1.02
CDH3-203ENST00000542274 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.65□□□□□ -1.02
CDH3-203ENST00000542274 CGB3P0DN86 165 aa8.65□□□□□ -1.02
CDH3-203ENST00000542274 CGB7P0DN87 165 aa8.65□□□□□ -1.02
CDH3-203ENST00000542274 PRB3Q04118 309 aaPredicted RBP8.65□□□□□ -1.02
CDH3-203ENST00000542274 TFF3Q07654 80 aa8.65□□□□□ -1.02
CDH3-203ENST00000542274 CCL17Q92583 94 aa8.65□□□□□ -1.02
CDH3-203ENST00000542274 AGPAT4-IT1Q9H0P7 198 aa8.65□□□□□ -1.02
CDH3-203ENST00000542274 TNCP24821 2201 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 SAA2P0DJI9 122 aaPredicted RBP8.65□□□□□ -1.03
CDH3-203ENST00000542274 CCL3L1P16619 93 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 GNLYP22749 145 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 DLX1P56177 255 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 EBI3Q14213 229 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 SHANK2-AS3Q9BTD1 123 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 AGRNO00468 2067 aa8.65□□□□□ -1.03
CDH3-203ENST00000542274 PMS2P5A8MQ11 134 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 E7EQL1 145 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 SLC25A20O43772 301 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 ARL14EPLP0DKL9 152 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 ERVK-16P61578 105 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 LYPD2Q6UXB3 125 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 NUP37Q8NFH4 326 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 NTN5Q8WTR8 489 aaPredicted RBP8.64□□□□□ -1.03
CDH3-203ENST00000542274 RNASE6Q93091 150 aaKnown RBP8.64□□□□□ -1.03
CDH3-203ENST00000542274 HIST1H4GQ99525 98 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 BEX4Q9NWD9 120 aaPredicted RBP8.64□□□□□ -1.03
CDH3-203ENST00000542274 MYMXA0A1B0GTQ4 84 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 C17orf100A8MU93 164 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 UBE2D3P61077 147 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 UBE2D2P62837 147 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 ASPHD1Q5U4P2 390 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 C11orf52Q96A22 123 aa8.64□□□□□ -1.03
CDH3-203ENST00000542274 LYNX1G3V0Z9 82 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 LYNX1P0DP58 116 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 PMAIP1Q13794 54 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 NPCDR1Q9BY65 106 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 NXT2Q9NPJ8 142 aaKnown RBP8.63□□□□□ -1.03
CDH3-203ENST00000542274 CD164Q04900 197 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 C16orf92Q96LL3 132 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 MYO18BQ8IUG5 2567 aa8.63□□□□□ -1.03
CDH3-203ENST00000542274 LINC01549A6NIU2 74 aa8.62□□□□□ -1.03
CDH3-203ENST00000542274 IGKV1-16P04430 117 aa8.62□□□□□ -1.03
CDH3-203ENST00000542274 ATP5G1P05496 136 aa8.62□□□□□ -1.03
CDH3-203ENST00000542274 HERVK_113P61574 105 aa8.62□□□□□ -1.03
CDH3-203ENST00000542274 ZNF414Q96IQ9 312 aa8.62□□□□□ -1.03
CDH3-203ENST00000542274 PRB1P04280 392 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 CT83Q5H943 113 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 TMEM200BQ69YZ2 307 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 S1PR3Q99500 378 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 IMUPQ9GZP8 106 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 ZNF355PQ9NSJ1 428 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 C19orf71A6NCJ1 209 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 NPYP01303 97 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 FBXL19-AS1Q494R0 122 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 SPANXDQ9BXN6 97 aa8.61□□□□□ -1.03
CDH3-203ENST00000542274 UTP20O75691 2785 aaKnown RBP8.61□□□□□ -1.03
CDH3-203ENST00000542274 USP9XQ93008 2570 aaPredicted RBP8.61□□□□□ -1.03
CDH3-203ENST00000542274 TRAV41A0A0B4J266 112 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 A0A1B0GXF2 115 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 SLC25A16P16260 332 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 ZNF503Q96F45 646 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 C17orf77Q96MU5 243 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 TRGV9Q99603 122 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 DPH3P1Q9H4G8 78 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 DYNLRB1Q9NP97 96 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 CTSZQ9UBR2 303 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 ZNF462Q96JM2 2506 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 SRRM4A7MD48 611 aaKnown RBP8.6□□□□□ -1.03
CDH3-203ENST00000542274 HIGD1CA8MV81 97 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 PIFOQ8TCI5 191 aa8.6□□□□□ -1.03
CDH3-203ENST00000542274 NABP2Q9BQ15 211 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms