RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 C2orf82Q6UX34 121 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 GOLT1AQ6ZVE7 132 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 MGAQ8IWI9 3026 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 MBD3L2Q8NHZ7 208 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-214ENST00000540539 METTL26Q96S19 204 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 TPSG1Q9NRR2 321 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 DKK4Q9UBT3 224 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 OOEPA6NGQ2 149 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 TIMM8AO60220 97 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV3-30P01768 117 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV3-30-5P0DP03 117 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 TMEM170BQ5T4T1 132 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 C8orf31Q8N9H6 132 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 SMCR5Q8TEV8 140 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 SHANK2-AS3Q9BTD1 123 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 PTPRQQ9UMZ3 2332 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 A0A0J9YY99 117 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 H7C2G1 150 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 EIF4EBP3O60516 100 aaPredicted RBP7.31□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV3-33P01772 117 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 DEFB121Q5J5C9 76 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 C10orf105Q8TEF2 133 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 A0A0G2JNJ9 132 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 H7C1H1 209 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 J3QT63 122 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 RPL39P5Q59GN2 51 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 C9orf85Q96MD7 179 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 FOXB1Q99853 325 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 Q9UFV3 132 aa7.31□□□□□ -1.24
CLIP1-214ENST00000540539 HOXB4P17483 251 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-214ENST00000540539 PLGLB1Q02325 96 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 AAED1Q7RTV5 226 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 FAM90A1Q86YD7 464 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 MDS2Q8NDY4 140 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 KLHL30-AS1Q8NEE0 82 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 RNF185Q96GF1 192 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 S1PR3Q99500 378 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 TPRP12270 2363 aaKnown RBP7.3□□□□□ -1.24
CLIP1-214ENST00000540539 CACNA1GO43497 2377 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 IGLV3-32A0A0A0MS00 114 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 H7C423 109 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 GP9P14770 177 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 PCBD1P61457 104 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 NSUN5P1Q3KNT7 163 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 C2orf83Q53S99 150 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 Q6ZS46 218 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 PRORYQ9H606 182 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 NBEAQ8NFP9 2946 aa7.3□□□□□ -1.24
CLIP1-214ENST00000540539 RNASE2P10153 161 aaKnown RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 PRB4P10163 310 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 GATA1P15976 413 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 HIST1H4AP62805 103 aaKnown RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 DEFB109BQ30KR1 87 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 SLC25A39Q9BZJ4 359 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 ZNF71Q9NQZ8 489 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 OTORQ9NRC9 128 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 DSPP15924 2871 aaKnown RBP7.29□□□□□ -1.24
CLIP1-214ENST00000540539 IGLV2-18A0A075B6J9 118 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 ATOX1O00244 68 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 PRCDQ00LT1 54 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 C5orf38Q86SI9 138 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 LINC00643Q86TS7 51 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 AGPAT4-IT1Q9H0P7 198 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 DPH3P1Q9H4G8 78 aa7.29□□□□□ -1.24
CLIP1-214ENST00000540539 IGKV1D-37A0A075B6S9 117 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV3-48P01763 117 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 C1orf195Q5TG92 126 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 Q6ZT83 130 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 UPK3BQ9BT76 320 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 ZZEF1O43149 2961 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 ACACBO00763 2458 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 TRAV12-1A0A0B4J245 112 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 H3BT86 120 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 SPINT2O43291 252 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 CCL11P51671 97 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 WDR86Q86TI4 376 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 LINC00311Q8N616 119 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 TMEM263Q8WUH6 116 aaKnown RBP7.28□□□□□ -1.24
CLIP1-214ENST00000540539 PRR25Q96S07 402 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 ZFAND3Q9H8U3 227 aa7.28□□□□□ -1.24
CLIP1-214ENST00000540539 BEX4Q9NWD9 120 aaPredicted RBP7.28□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV3-64DA0A0J9YX35 117 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 TRBV6-1A0A0K0K1D8 114 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 A0A1W2PRX2 142 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 AVPP01185 164 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 EEF1AKMT3Q96AZ1 226 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 MSRB1Q9NZV6 116 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 PRRC2CQ9Y520 2896 aaKnown RBP7.27□□□□□ -1.25
CLIP1-214ENST00000540539 NAV3Q8IVL0 2385 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 MAP1BP46821 2468 aaKnown RBP7.27□□□□□ -1.25
CLIP1-214ENST00000540539 C17orf100A8MU93 164 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 IL17RELQ6ZVW7 336 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 NEXN-AS1Q8NBZ9 246 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 SIRPDQ9H106 197 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 PIEZO2Q9H5I5 2752 aa7.27□□□□□ -1.25
CLIP1-214ENST00000540539 TFF1P04155 84 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 Q1RN00 199 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 C1orf229Q6ZS94 237 aaPredicted RBP7.26□□□□□ -1.25
CLIP1-214ENST00000540539 Q8IYB0 196 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 FDCSPQ8NFU4 85 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms