RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 THBDP07204 575 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 NFE4Q86UQ8 179 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 A8MWV9 139 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 M0R381 172 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 MGPP08493 103 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 LGALS1P09382 135 aaKnown RBP9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 SLC25A16P16260 332 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 RNASE6Q93091 150 aaKnown RBP9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 CDIP1Q9H305 208 aa9.95□□□□□ -0.82
SFSWAP-209ENST00000540469 S100A4P26447 101 aaKnown RBP9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 TEX29Q8N6K0 151 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 CSMD1Q96PZ7 3565 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 FHL3Q13643 280 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 EMP1P54849 157 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 ZFAND6Q6FIF0 208 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 DEFB104AQ8WTQ1 72 aa9.94□□□□□ -0.82
SFSWAP-209ENST00000540469 COL6A6A6NMZ7 2263 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 H7C2G1 150 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 ATP6V0E2Q8NHE4 81 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 SPTAN1Q13813 2472 aaKnown RBP9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 SPRY2O43597 315 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 ORMDL2Q53FV1 153 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 PLA2G2CQ5R387 149 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 SMIM2Q9BVW6 85 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 ARHGAP32A7KAX9 2087 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 IGKV3D-20A0A0C4DH25 116 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 TSPAN13O95857 204 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 PRTN3P24158 256 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 SMCPP49901 116 aaPredicted RBP9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 KLHL30-AS1Q8NEE0 82 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 CNFNQ9BYD5 112 aa9.93□□□□□ -0.82
SFSWAP-209ENST00000540469 IGLV2-18A0A075B6J9 118 aa9.92□□□□□ -0.82
SFSWAP-209ENST00000540469 TEN1Q86WV5 123 aa9.92□□□□□ -0.82
SFSWAP-209ENST00000540469 PLEKHB2Q96CS7 222 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 FANCD2OSQ96PS1 177 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 RNF5Q99942 180 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 KAAG1Q9UBP8 84 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 SMAD5-AS1Q9Y6J3 95 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 TRAV8-2A0A0B4J237 113 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 HERVK_113P61574 105 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 NRACQ8N912 160 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 KIR2DL4Q99706 377 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 DPM3Q9P2X0 92 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 LINC01546A6NGU7 62 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 C2orf66Q6UXQ4 117 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 TACC2O95359 2948 aa9.91□□□□□ -0.82
SFSWAP-209ENST00000540469 ZNF688P0C7X2 276 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 C5orf64Q2M2E5 130 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 COX8CQ7Z4L0 72 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 ERG28Q9UKR5 140 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 IGLV11-55A0A075B6I3 123 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 Q1RN00 199 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 AGPAT4-IT1Q9H0P7 198 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 VCX2Q9H322 139 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 C11orf21Q9P2W6 132 aa9.9□□□□□ -0.82
SFSWAP-209ENST00000540469 SUMO2P61956 95 aaKnown RBP9.9□□□□□ -0.83
SFSWAP-209ENST00000540469 COL27A1Q8IZC6 1860 aaPredicted RBP9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 TRAV12-1A0A0B4J245 112 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 SRSF2Q01130 221 aaKnown RBP9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 ECSCRQ19T08 205 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 IGFL2Q6UWQ7 119 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 TRBV7-9A0A0J9YWB2 115 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 SNCGO76070 127 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 TCL1BO95988 128 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 TMEM170BQ5T4T1 132 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 OR11H6Q8NGC7 330 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 TLN1Q9Y490 2541 aaKnown RBP9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 IGHG4P01861 327 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 CTSGP08311 255 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 ANKRD29Q8N6D5 301 aa9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 C14orf178Q8N769 122 aaPredicted RBP9.89□□□□□ -0.83
SFSWAP-209ENST00000540469 COL12A1Q99715 3063 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 TMEM262E9PQX1 116 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 GAGE5Q13069 117 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 GAGE6Q13070 117 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 RPL39LQ96EH5 51 aaKnown RBP9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 RAX2Q96IS3 184 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 SLC50A1Q9BRV3 221 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 PHLDA3Q9Y5J5 127 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 RELNP78509 3460 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 C9JAW5 83 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 TNFRSF13BO14836 293 aaPredicted RBP9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 FOXC1Q12948 553 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 Q6ZQT7 251 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 C1orf122Q6ZSJ8 110 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 ZFYVE26Q68DK2 2539 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 ACACBO00763 2458 aa9.88□□□□□ -0.83
SFSWAP-209ENST00000540469 GAGE2BQ13066 116 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 GAGE2EQ4V326 116 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 TTC32Q5I0X7 151 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 CARD19Q96LW7 228 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 GAGE2DQ9UEU5 116 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 BAALCQ8WXS3 180 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 CLEC3BP05452 202 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 NDPQ00604 133 aa9.87□□□□□ -0.83
SFSWAP-209ENST00000540469 F8W735 103 aaPredicted RBP9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 ZNF575Q86XF7 245 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 NEXN-AS1Q8NBZ9 246 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 C16orf92Q96LL3 132 aa9.86□□□□□ -0.83
SFSWAP-209ENST00000540469 LINC01619G3V211 115 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms