RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RNASE6Q93091 150 aaKnown RBP7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 NXT2Q9NPJ8 142 aaKnown RBP7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 ICE1Q9Y2F5 2266 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 HERVK_113P63121 156 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 PRADC1Q9BSG0 188 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 ANKHD1Q8IWZ3 2542 aaKnown RBP7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 IGHV3OR15-7A0A075B7D8 119 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 M0R2P5 195 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 SAA2P0DJI9 122 aaPredicted RBP7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 CD40P25942 277 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 OR13C6PQ8NH95 151 aa7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 ITLN2Q8WWU7 325 aaPredicted RBP7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 SLC25A39Q9BZJ4 359 aaPredicted RBP7.36□□□□□ -1.23
CTNNA1-243ENST00000540387 A0A1B0GX51 115 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 TIMM23O14925 209 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 ERHP84090 104 aaKnown RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 TRPT1Q86TN4 253 aaKnown RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 MYOZ3Q8TDC0 251 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 PLEKHB2Q96CS7 222 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 EDA2RQ9HAV5 297 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 KLK5Q9Y337 293 aaPredicted RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 USP9XQ93008 2570 aaPredicted RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 ABCA4P78363 2273 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 PLCE1Q9P212 2302 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 TEX49A0A1B0GTD5 131 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 TNFRSF6BO95407 300 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 GATA4P43694 442 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 SCGB1D4Q6XE38 83 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 ZCCHC24Q8N2G6 241 aaKnown RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 C10orf126Q8N4M7 172 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 KLF14Q8TD94 323 aaPredicted RBP7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 RNF185Q96GF1 192 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 NAV3Q8IVL0 2385 aa7.35□□□□□ -1.23
CTNNA1-243ENST00000540387 ZNF815PA8K554 130 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 IGKV1-16P04430 117 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 IGLC6P0CF74 106 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 MFAP4P55083 255 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 MSMPQ1L6U9 139 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 C3orf36Q3SXR2 165 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 TMEM75Q8N9X5 138 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 C8orf49Q96NF6 230 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 MRPL20Q9BYC9 149 aaKnown RBP7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 CFC1BP0CG36 223 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 CFC1P0CG37 223 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 GATA1P15976 413 aaPredicted RBP7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 RPL13AP40429 203 aaKnown RBP7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 BSPH1Q075Z2 132 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 C3orf22Q8N5N4 141 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 TIMD4Q96H15 378 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 NDUFA4L2Q9NRX3 87 aa7.34□□□□□ -1.23
CTNNA1-243ENST00000540387 E7EUB6 86 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 F5H768 121 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 SAA1P0DJI8 122 aaPredicted RBP7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 ZNF56Q15929 161 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 RUSC1-AS1Q66K80 236 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 CD177Q8N6Q3 437 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 KRTAP3-3Q9BYR6 98 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 KRTAP3-2Q9BYR7 98 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 CTSZQ9UBR2 303 aa7.34□□□□□ -1.24
CTNNA1-243ENST00000540387 TRBV7-7A0A0K0K1E9 115 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 F8VRH5 84 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 F8WDY8 70 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 LGALS9O00182 355 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 EFNA4P52798 201 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 EMP1P54849 157 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 Q8N8P6 123 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 DSCAML1Q8TD84 2053 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 FAM236AA0A1B0GUQ0 79 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 FAM236BA0A1B0GV22 79 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 H7C1H1 209 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 MRPS12O15235 138 aaKnown RBP7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 MSRB1Q9NZV6 116 aa7.33□□□□□ -1.24
CTNNA1-243ENST00000540387 ARFGEF3Q5TH69 2177 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 DOPEY1Q5JWR5 2465 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 PKDREJQ9NTG1 2253 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 IGLV2-18A0A075B6J9 118 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 RBAKDNA6NC62 111 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 C19orf84I3L1E1 186 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 WT1-ASQ06250 92 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 SH2D1AO60880 128 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 RPS28P62857 69 aaKnown RBP7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 PRO1854Q9UHT4 67 aa7.32□□□□□ -1.24
CTNNA1-243ENST00000540387 LRRK2Q5S007 2527 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 TRGV11A0A075B6L2 103 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 IQCF6A8MYZ5 107 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 H3BMM0 161 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 UQCRQO14949 82 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 SLC25A16P16260 332 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 HLA-DMBP28068 263 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 POM121L12Q8N7R1 296 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 UBE2WQ96B02 151 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 TIMM8AO60220 97 aaPredicted RBP7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 PRDX2P32119 198 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 SUB1P53999 127 aaKnown RBP eCLIP7.31□□□□□ -1.243e-9■■■■■ 34.7
CTNNA1-243ENST00000540387 CEMP1Q6PRD7 247 aaPredicted RBP7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 TMEM219Q86XT9 240 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 LINC00526Q96FQ7 95 aa7.31□□□□□ -1.24
CTNNA1-243ENST00000540387 TRAV12-1A0A0B4J245 112 aa7.3□□□□□ -1.24
CTNNA1-243ENST00000540387 COX6B1P14854 86 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms