RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 Q6ZS46 218 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 SPANXB1Q9NS25 103 aaPredicted RBP7.43□□□□□ -1.22
CLIP1-212ENST00000540304 CYSLTR1Q9Y271 337 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 SMAD5-AS1Q9Y6J3 95 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 IZUMO1RA6ND01 250 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE12JA6NER3 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 J3QKU1 62 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 M0R3E3 92 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE7O76087 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE12FP0CL80 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE12GP0CL81 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE12IP0CL82 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 CSN1S1P47710 185 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 GAGE4Q13068 117 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 C9orf139Q6ZV77 190 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 KRTAP1-3Q8IUG1 177 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 METTL26Q96S19 204 aa7.43□□□□□ -1.22
CLIP1-212ENST00000540304 C19orf71A6NCJ1 209 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 IGLV1-40P01703 118 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 INSL3P51460 131 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 TSKUQ8WUA8 353 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 C20orf78Q9BR46 151 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 GNB1LQ9BYB4 327 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 RPP21Q9H633 154 aaKnown RBP7.42□□□□□ -1.22
CLIP1-212ENST00000540304 SNURFLB1AK76 121 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 P01737 135 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 CFHR3Q02985 330 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 CT83Q5H943 113 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 LINC00322Q6ZN03 302 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-212ENST00000540304 CIARTQ8N365 385 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-212ENST00000540304 PRSS22Q9GZN4 317 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 MRPL18Q9H0U6 180 aaKnown RBP7.42□□□□□ -1.22
CLIP1-212ENST00000540304 NAT8BQ9UHF3 227 aa7.42□□□□□ -1.22
CLIP1-212ENST00000540304 HELZ2Q9BYK8 2649 aaKnown RBP7.41□□□□□ -1.22
CLIP1-212ENST00000540304 PRRC2AP48634 2157 aaKnown RBP7.41□□□□□ -1.22
CLIP1-212ENST00000540304 ITPR3Q14573 2671 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 IGHV3OR16-13A0A075B7E8 117 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 IGHV3-74A0A0B4J1X5 117 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 ZNF785A8K8V0 405 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 MT-ND6P03923 174 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 PMCHL1Q16048 86 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 HIST2H2BCQ6DN03 193 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 CDIP1Q9H305 208 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 CUBNO60494 3623 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 IGHV3-66A0A0C4DH42 116 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 XGP55808 180 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 IGFL4Q6B9Z1 124 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 SH2D6Q7Z4S9 175 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 KLK15Q9H2R5 256 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 ZNF331Q9NQX6 463 aaPredicted RBP7.41□□□□□ -1.22
CLIP1-212ENST00000540304 U3KQE9 123 aa7.41□□□□□ -1.22
CLIP1-212ENST00000540304 IGHV3-49A0A0A0MS15 119 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 LOC107984640A0A0U1RRK4 108 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 A8MWL6 223 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 NDUFA4O00483 81 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 SRSF2Q01130 221 aaKnown RBP7.4□□□□□ -1.22
CLIP1-212ENST00000540304 FOXE3Q13461 319 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 MRPL54Q6P161 138 aaKnown RBP7.4□□□□□ -1.22
CLIP1-212ENST00000540304 RASL11AQ6T310 242 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 Q6YL49 198 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 NUP35Q8NFH5 326 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 MAP1LC3CQ9BXW4 147 aa7.4□□□□□ -1.22
CLIP1-212ENST00000540304 HIGD1CA8MV81 97 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 NPIPB6E9PJ23 425 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 CHEK1O14757 476 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 TRBV12-3P01733 135 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 APOHP02749 345 aaPredicted RBP7.4□□□□□ -1.23
CLIP1-212ENST00000540304 LINC01559Q495D7 138 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 FAM162BQ5T6X4 162 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 TMEM136Q6ZRR5 245 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 LCNL1Q6ZST4 164 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 Q6ZUT4 128 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 WIPF2Q8TF74 440 aaPredicted RBP7.4□□□□□ -1.23
CLIP1-212ENST00000540304 PSMG3-AS1Q96PY0 264 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 SLC50A1Q9BRV3 221 aa7.4□□□□□ -1.23
CLIP1-212ENST00000540304 MYO9AB2RTY4 2548 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 FLNAP21333 2647 aaKnown RBP7.39□□□□□ -1.23
CLIP1-212ENST00000540304 A0A1W2PPM0 123 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 M0R2Z0 102 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 IGHV3-11P01762 117 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 SEC61GP60059 68 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 WFDC2Q14508 124 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 SLC25A34Q6PIV7 304 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 FAM19A2Q8N3H0 131 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 OR4X2Q8NGF9 303 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 GFRA4Q9GZZ7 299 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 IGKV2-40A0A087WW87 121 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-212ENST00000540304 H3BRM9 83 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 IGKV2D-40P01614 121 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-212ENST00000540304 IGHG4P01861 327 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 HLA-DQA1P01909 254 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 ATP5L2Q7Z4Y8 100 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 RAB37Q96AX2 223 aa7.39□□□□□ -1.23
CLIP1-212ENST00000540304 KMT2BQ9UMN6 2715 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-212ENST00000540304 ITPR2Q14571 2701 aa7.38□□□□□ -1.23
CLIP1-212ENST00000540304 A0A1W2PS18 150 aa7.38□□□□□ -1.23
CLIP1-212ENST00000540304 HLA-DMBP28068 263 aa7.38□□□□□ -1.23
CLIP1-212ENST00000540304 ETDBQ3ZM63 59 aa7.38□□□□□ -1.23
CLIP1-212ENST00000540304 TMEM78Q5T7P6 136 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms