RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TRAV4A0A0B4J268 109 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 C19orf84I3L1E1 186 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 IGLV2-11P01706 119 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 PPP1R27Q86WC6 154 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 MAP1LC3AQ9H492 121 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 CENPEQ02224 2701 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 GAS8-AS1O95177 125 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 IFITM1P13164 125 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 GP9P14770 177 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 LYZP61626 148 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 PAX8Q06710 450 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 TAL2Q16559 108 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 PIFOQ8TCI5 191 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 TMEM158Q8WZ71 300 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 A8MWV9 139 aa10.87□□□□□ -0.67
LIG1-203ENST00000536218 CRIP1P50238 77 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 PSMG4Q5JS54 123 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 C8orf49Q96NF6 230 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 RHODO00212 210 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 ZNF493Q6ZR52 646 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 ANKRD29Q8N6D5 301 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 ZMAT4Q9H898 229 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 OTORQ9NRC9 128 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 U3KQK5 164 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 CFAP46Q8IYW2 2715 aa10.86□□□□□ -0.67
LIG1-203ENST00000536218 TMEM262E9PQX1 116 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 CRLF1O75462 422 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 SCGB1C2P0DMR2 95 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 HLA-DRB4P13762 266 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 ATP5IP56385 69 aaPredicted RBP10.85□□□□□ -0.67
LIG1-203ENST00000536218 RAX2Q96IS3 184 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 PPDPFQ9H3Y8 114 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 HLA-DRB4X5D2U9 266 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 TRBV7-3A0A075B6L6 115 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIG1-203ENST00000536218 MEIG1Q5JSS6 88 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 ITLN2Q8WWU7 325 aaPredicted RBP10.85□□□□□ -0.67
LIG1-203ENST00000536218 DPM3Q9P2X0 92 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 ATP5J2P56134 94 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 C17orf77Q96MU5 243 aa10.85□□□□□ -0.67
LIG1-203ENST00000536218 GATA1P15976 413 aaPredicted RBP10.84□□□□□ -0.67
LIG1-203ENST00000536218 ZFP36P26651 326 aaKnown RBP10.84□□□□□ -0.67
LIG1-203ENST00000536218 LY6G5BQ8NDX9 201 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 VCX2Q9H322 139 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 A0A087WX48 190 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 M0QXV9 152 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 GATD1Q8NB37 220 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 C8orf46Q8TAG6 207 aa10.84□□□□□ -0.67
LIG1-203ENST00000536218 M0R3E3 92 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 ATP5LO75964 103 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 SCGB1D4Q6XE38 83 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 MSRB1Q9NZV6 116 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 S4R3C0 116 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 SRD5A1P18405 259 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 MYMXA0A1B0GTQ4 84 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 TCL1BO95988 128 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 CRYGBP07316 175 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 Q6ZQT7 251 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 HIGD1AQ9Y241 93 aa10.83□□□□□ -0.68
LIG1-203ENST00000536218 LY6LH3BQJ8 138 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 DTX2Q86UW9 622 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 MYOZ3Q8TDC0 251 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 VPREB3Q9UKI3 123 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 MYO18BQ8IUG5 2567 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 FLNCQ14315 2725 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 INS-IGF2F8WCM5 200 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 VMO1Q7Z5L0 202 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 THAP8Q8NA92 274 aa10.82□□□□□ -0.68
LIG1-203ENST00000536218 J3KRW8 73 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 TEX22C9J3V5 150 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 DYNAPQ8N1N2 210 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 AAMDCQ9H7C9 122 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 TNFRSF6BO95407 300 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 IGSF10Q6WRI0 2623 aa10.81□□□□□ -0.68
LIG1-203ENST00000536218 BPESC1Q9GZL8 116 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 SH2D1AO60880 128 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 OR11H6Q8NGC7 330 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 RASL11BQ9BPW5 248 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 KLK15Q9H2R5 256 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 FAM208BQ5VWN6 2430 aa10.8□□□□□ -0.68
LIG1-203ENST00000536218 EFNA4P52798 201 aa10.79□□□□□ -0.68
LIG1-203ENST00000536218 NBR2O15453 112 aa10.79□□□□□ -0.68
LIG1-203ENST00000536218 LYRM7Q5U5X0 104 aa10.79□□□□□ -0.68
LIG1-203ENST00000536218 USP9XQ93008 2570 aaPredicted RBP10.79□□□□□ -0.68
LIG1-203ENST00000536218 TMEM78Q5T7P6 136 aa10.79□□□□□ -0.68
LIG1-203ENST00000536218 NXT2Q9NPJ8 142 aaKnown RBP10.79□□□□□ -0.68
LIG1-203ENST00000536218 C9JAW5 83 aa10.78□□□□□ -0.68
LIG1-203ENST00000536218 M0R1W7 72 aa10.78□□□□□ -0.68
LIG1-203ENST00000536218 SLC25A39Q9BZJ4 359 aaPredicted RBP10.78□□□□□ -0.68
LIG1-203ENST00000536218 LGALS1P09382 135 aaKnown RBP10.78□□□□□ -0.68
LIG1-203ENST00000536218 CFHR4Q92496 578 aa10.78□□□□□ -0.68
LIG1-203ENST00000536218 CENPVL3A0A0U1RRI6 287 aa10.77□□□□□ -0.68
LIG1-203ENST00000536218 ZNF815PA8K554 130 aa10.77□□□□□ -0.68
LIG1-203ENST00000536218 TMEM75Q8N9X5 138 aa10.77□□□□□ -0.68
LIG1-203ENST00000536218 TRGV9Q99603 122 aa10.77□□□□□ -0.68
LIG1-203ENST00000536218 VPS13CQ709C8 3753 aa10.77□□□□□ -0.69
LIG1-203ENST00000536218 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.77□□□□□ -0.691e-7■■■■□ 22.1
LIG1-203ENST00000536218 H7C2G1 150 aa10.77□□□□□ -0.69
LIG1-203ENST00000536218 CRYBG3Q68DQ2 2970 aa10.76□□□□□ -0.69
LIG1-203ENST00000536218 CELSR1Q9NYQ6 3014 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms