RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DNAH10Q8IVF4 4471 aa9.09□□□□□ -0.95
VPS28-216ENST00000533806 IGHV3-16A0A0C4DH30 117 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 TRBV6-1A0A0K0K1D8 114 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 GCGP01275 180 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 PFN1P07737 140 aaKnown RBP9.08□□□□□ -0.96
VPS28-216ENST00000533806 CCL20P78556 96 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 TMEM183BQ1AE95 376 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 EIF5AL1Q6IS14 154 aaKnown RBP9.08□□□□□ -0.96
VPS28-216ENST00000533806 TMEM183AQ8IXX5 376 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 C15orf53Q8NAA6 179 aa9.08□□□□□ -0.96
VPS28-216ENST00000533806 TRGV11A0A075B6L2 103 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 TRGV1A0A0A0MS02 117 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 P0DMU3 169 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 FAM231AP0DMU4 169 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 FAM231CP0DMU5 169 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 CRIP1P50238 77 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 ZNF415Q09FC8 603 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 SMUG1Q53HV7 270 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 CST9LP1Q5W188 147 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 Q86TA4 180 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 RASL10AQ92737 203 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 SPXQ9BT56 116 aa9.07□□□□□ -0.96
VPS28-216ENST00000533806 A0A1B0GV50 99 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 H3BNG1 76 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 TYMSP04818 313 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 PPT1P50897 306 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 ZFP69Q49AA0 526 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 ZNF575Q86XF7 245 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 POM121L12Q8N7R1 296 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 FMC1Q96HJ9 113 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 KCNS1Q96KK3 526 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 MRPL16Q9NX20 251 aaKnown RBP9.06□□□□□ -0.96
VPS28-216ENST00000533806 ZFP30Q9Y2G7 519 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 DNAH2Q9P225 4427 aa9.06□□□□□ -0.96
VPS28-216ENST00000533806 TRGV2A0A075B6R0 118 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 LTAP01374 205 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 RNF212Q495C1 297 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 VSIG2Q96IQ7 327 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 SDF2L1Q9HCN8 221 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 NAGKQ9UJ70 344 aa9.05□□□□□ -0.96
VPS28-216ENST00000533806 FRAS1Q86XX4 4008 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 TRAV26-1A0A087WT03 109 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 IGKV3D-20A0A0C4DH25 116 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 FABP5P3A8MUU1 101 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 OR5I1Q13606 314 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 ZC2HC1AQ96GY0 325 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 MLST8Q9BVC4 326 aa9.04□□□□□ -0.96
VPS28-216ENST00000533806 SCO2A0A1W2PP80 73 aa9.03□□□□□ -0.96
VPS28-216ENST00000533806 RNASE3P12724 160 aaKnown RBP9.03□□□□□ -0.96
VPS28-216ENST00000533806 FHL2Q14192 279 aa9.03□□□□□ -0.96
VPS28-216ENST00000533806 C9orf85Q96MD7 179 aa9.03□□□□□ -0.96
VPS28-216ENST00000533806 MANBALQ9NQG1 85 aa9.03□□□□□ -0.96
VPS28-216ENST00000533806 M0R2P5 195 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 S100A9P06702 114 aaKnown RBP9.02□□□□□ -0.97
VPS28-216ENST00000533806 NKX2-5P52952 324 aaPredicted RBP9.02□□□□□ -0.97
VPS28-216ENST00000533806 UBE2G1P62253 170 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 ZNF674Q2M3X9 581 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 C11orf52Q96A22 123 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 PTH2Q96A98 100 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 GNG13Q9P2W3 67 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 MUC4Q99102 2169 aa9.02□□□□□ -0.97
VPS28-216ENST00000533806 A0A0J9YY99 117 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 NUDT3O95989 172 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 AKR1C3P42330 323 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 FAM3BP58499 235 aaPredicted RBP9.01□□□□□ -0.97
VPS28-216ENST00000533806 DNLZQ5SXM8 178 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 ZNF479Q96JC4 524 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 TXNDC17Q9BRA2 123 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 BOLA1Q9Y3E2 137 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 DNAH17Q9UFH2 4485 aa9.01□□□□□ -0.97
VPS28-216ENST00000533806 A0A096LPF7 62 aa9□□□□□ -0.97
VPS28-216ENST00000533806 KRBOX1C9JBD0 128 aa9□□□□□ -0.97
VPS28-216ENST00000533806 SH2D1AO60880 128 aa9□□□□□ -0.97
VPS28-216ENST00000533806 IGHV3-53P01767 116 aa9□□□□□ -0.97
VPS28-216ENST00000533806 CRYBA4P53673 196 aa9□□□□□ -0.97
VPS28-216ENST00000533806 FAM162BQ5T6X4 162 aa9□□□□□ -0.97
VPS28-216ENST00000533806 ALKAL2Q6UX46 152 aa9□□□□□ -0.97
VPS28-216ENST00000533806 LYPD6BQ8NI32 183 aa9□□□□□ -0.97
VPS28-216ENST00000533806 PRO0255Q9UI72 69 aa9□□□□□ -0.97
VPS28-216ENST00000533806 LINC00588Q9Y4M8 146 aa9□□□□□ -0.97
VPS28-216ENST00000533806 FAT2Q9NYQ8 4349 aa9□□□□□ -0.97
VPS28-216ENST00000533806 BIRC6Q9NR09 4857 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 TRAV4A0A0B4J268 109 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 PGPEP1LA6NFU8 196 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 TEX46H3BTG2 121 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 SFTA3P0C7M3 94 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 SLAQ13239 276 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 ZNF876PQ49A33 203 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 Q6ZR54 194 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 ZNRF2Q8NHG8 242 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 DERL1Q9BUN8 251 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 HHLA3Q9XRX5 114 aa8.99□□□□□ -0.97
VPS28-216ENST00000533806 B4DEV8 164 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 ORM1P02763 201 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 BCL2P10415 239 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 RPL35P42766 123 aaKnown RBP8.98□□□□□ -0.97
VPS28-216ENST00000533806 MEF2BQ02080 365 aaPredicted RBP8.98□□□□□ -0.97
VPS28-216ENST00000533806 ESRGQ1W209 222 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 LINC01559Q495D7 138 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 PIK3CD-AS1Q5SR53 167 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms