RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TUBA4BQ9H853 241 aa5.42□□□□□ -1.54
CD44-228ENST00000528455 CARHSP1Q9Y2V2 147 aaKnown RBP5.42□□□□□ -1.54
CD44-228ENST00000528455 COL7A1Q02388 2944 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 TRBV20OR9-2A0A075B6H5 130 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 LOC102724200A0A096LPH7 203 aaPredicted RBP5.41□□□□□ -1.54
CD44-228ENST00000528455 ZNF324O75467 553 aaPredicted RBP5.41□□□□□ -1.54
CD44-228ENST00000528455 IGKV3-20P01619 116 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 CRIP1P50238 77 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 CENPWQ5EE01 88 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 Q6AWC8 147 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 Q86TA4 180 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 LINC01551Q86U37 167 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 ZFAND2AQ8N6M9 145 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 C20orf144Q9BQM9 153 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 SRD5A3Q9H8P0 318 aa5.41□□□□□ -1.54
CD44-228ENST00000528455 TRAV21A0A0B4J279 112 aa5.4□□□□□ -1.54
CD44-228ENST00000528455 RBMY1BA6NDE4 496 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 RBMY1EA6NEQ0 496 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 RBMY1DP0C7P1 496 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 IGHV4-30-4P0DP06 118 aa5.4□□□□□ -1.54
CD44-228ENST00000528455 PRB4P10163 310 aaPredicted RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 RNASE4P34096 147 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 APOC4P55056 127 aa5.4□□□□□ -1.54
CD44-228ENST00000528455 RPL23P62829 140 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 FAM231DQ6ZW35 169 aa5.4□□□□□ -1.54
CD44-228ENST00000528455 LINC00476Q8WZB0 136 aa5.4□□□□□ -1.54
CD44-228ENST00000528455 DAZAP1Q96EP5 407 aaKnown RBP5.4□□□□□ -1.54
CD44-228ENST00000528455 C19orf71A6NCJ1 209 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 F5H697 171 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 K7EN84 100 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 PPP1R2P9O14990 202 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 CRXO43186 299 aaPredicted RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 PFN1P07737 140 aaKnown RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 GIG44P09565 113 aaPredicted RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 MGST1P10620 155 aaKnown RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 RPL35AP18077 110 aaKnown RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 ADCYAP1P18509 176 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 S100A1P23297 94 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 ZNF80P51504 273 aaPredicted RBP5.39□□□□□ -1.55
CD44-228ENST00000528455 SPINK13Q1W4C9 94 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 FAM162BQ5T6X4 162 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 TMEM256Q8N2U0 113 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 SVBPQ8N300 66 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 CSNK1G2-AS1Q8NCQ2 148 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 Q8TAT8 98 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 ISOC2Q96AB3 205 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 ZC2HC1AQ96GY0 325 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 KCNS1Q96KK3 526 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 B9D2Q9BPU9 175 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 LINC00467Q9BRT7 94 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 WFDC10AQ9H1F0 79 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 OSTCQ9NRP0 149 aa5.39□□□□□ -1.55
CD44-228ENST00000528455 TRAV12-3A0A0B4J271 114 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 C7orf71A4D174 169 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 PGPEP1LA6NFU8 196 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 H7BYZ3 331 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 M0R2Z0 102 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 TRIAP1O43715 76 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 SNAPINO95295 136 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 APOC3P02656 99 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 MT-ND4LP03901 98 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 ERVFC1-1P60608 527 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 FOXI1Q12951 378 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 OR5I1Q13606 314 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 ADIRFQ15847 76 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 TDRG1Q3Y452 100 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 GFI1BQ5VTD9 330 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 Q6ZWC4 215 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 C15orf54Q8N8G6 183 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 NHLRC2Q8NBF2 726 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 SFRP2Q96HF1 295 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 PYGO2Q9BRQ0 406 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 TMEM242Q9NWH2 141 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 XCL2Q9UBD3 114 aa5.38□□□□□ -1.55
CD44-228ENST00000528455 TRAV12-2A0A075B6T6 113 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 A0A087WWC5 75 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 XKRY2A2RUG3 117 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 FAM231BA6NCW3 169 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 SMIM9A6NGZ8 99 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 SH2D1AO60880 128 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 INSP01308 110 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 P01737 135 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 ORM1P02763 201 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 SLPIP03973 132 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 FOXA3P55318 350 aaPredicted RBP5.37□□□□□ -1.55
CD44-228ENST00000528455 RPS20P60866 119 aaKnown RBP5.37□□□□□ -1.55
CD44-228ENST00000528455 FHL2Q14192 279 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 DNLZQ5SXM8 178 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 IBA57Q5T440 356 aaKnown RBP5.37□□□□□ -1.55
CD44-228ENST00000528455 FAM159AQ6UWV7 190 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 ZNF705AQ6ZN79 300 aaPredicted RBP5.37□□□□□ -1.55
CD44-228ENST00000528455 ZNF575Q86XF7 245 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 C1orf158Q8N1D5 194 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 OR10G8Q8NGN5 311 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 CTDSP1Q9GZU7 261 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 TP53TG3Q9ULZ0 132 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 GOLT1BQ9Y3E0 138 aa5.37□□□□□ -1.55
CD44-228ENST00000528455 DNAH9Q9NYC9 4486 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 IGHV1OR15-1A0A075B7D0 117 aa5.36□□□□□ -1.55
CD44-228ENST00000528455 IGKV3D-20A0A0C4DH25 116 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 2047.9 ms