RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 IGHV3-16A0A0C4DH30 117 aa14.3□□□□□ -0.12
VPS28-206ENST00000526734 A0A0D9SG52 128 aa14.3□□□□□ -0.12
VPS28-206ENST00000526734 SMUG1Q53HV7 270 aa14.3□□□□□ -0.12
VPS28-206ENST00000526734 STOML3Q8TAV4 291 aa14.3□□□□□ -0.12
VPS28-206ENST00000526734 MAP1LC3B2A6NCE7 125 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 M0R2P5 195 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 IFNA7P01567 189 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 IGLV2-11P01706 119 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 PFN1P07737 140 aaKnown RBP14.29□□□□□ -0.12
VPS28-206ENST00000526734 HIST1H2BAQ96A08 127 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 TCEAL7Q9BRU2 100 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 MAP1LC3BQ9GZQ8 125 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 MUC4Q99102 2169 aa14.29□□□□□ -0.12
VPS28-206ENST00000526734 TRGV4A0A0C4DH28 118 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 SMLR1H3BR10 107 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 GCGP01275 180 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 IGHV3-53P01767 116 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 TYMSP04818 313 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 SEC11BP0C7V7 166 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 CRYBA4P53673 196 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 EIF5AP63241 154 aaKnown RBP14.28□□□□□ -0.12
VPS28-206ENST00000526734 FHL2Q14192 279 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 ESRGQ1W209 222 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 SGK494Q96LW2 274 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 Q9H8V8 135 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 HHLA3Q9XRX5 114 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 ARL2-SNX15V9GYD0 113 aa14.28□□□□□ -0.12
VPS28-206ENST00000526734 TRAV4A0A0B4J268 109 aa14.27□□□□□ -0.13
VPS28-206ENST00000526734 A0A1B0GVY2 172 aa14.27□□□□□ -0.13
VPS28-206ENST00000526734 UMAD1C9J7I0 102 aa14.27□□□□□ -0.13
VPS28-206ENST00000526734 MRPL23Q16540 153 aaKnown RBP14.27□□□□□ -0.13
VPS28-206ENST00000526734 PRNTQ86SH4 94 aa14.27□□□□□ -0.13
VPS28-206ENST00000526734 A0A1W2PPQ1 181 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 KANTRA0A1W2PQU2 76 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 FAM74A7A6NL05 159 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 PEX7O00628 323 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 GNRH2O43555 120 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 BTF3P20290 206 aaKnown RBP14.26□□□□□ -0.13
VPS28-206ENST00000526734 UBE2G2P60604 165 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 C6orf223Q8N319 242 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 C8orf49Q96NF6 230 aa14.26□□□□□ -0.13
VPS28-206ENST00000526734 HECTD4Q9Y4D8 3996 aa14.25□□□□□ -0.13
VPS28-206ENST00000526734 BCL2L11O43521 198 aa14.25□□□□□ -0.13
VPS28-206ENST00000526734 CIDEAO60543 219 aa14.25□□□□□ -0.13
VPS28-206ENST00000526734 ORM1P02763 201 aa14.25□□□□□ -0.13
VPS28-206ENST00000526734 FHITP49789 147 aa14.25□□□□□ -0.13
VPS28-206ENST00000526734 ZNF80P51504 273 aaPredicted RBP14.25□□□□□ -0.13
VPS28-206ENST00000526734 FGF8P55075 233 aaPredicted RBP14.25□□□□□ -0.13
VPS28-206ENST00000526734 DPPA3Q6W0C5 159 aa14.24□□□□□ -0.13
VPS28-206ENST00000526734 OR4C5Q8NGB2 326 aa14.24□□□□□ -0.13
VPS28-206ENST00000526734 PCNPQ8WW12 178 aaKnown RBP14.24□□□□□ -0.13
VPS28-206ENST00000526734 ZNF479Q96JC4 524 aa14.24□□□□□ -0.13
VPS28-206ENST00000526734 ZNF471Q9BX82 626 aaPredicted RBP14.24□□□□□ -0.13
VPS28-206ENST00000526734 Q86TA4 180 aa14.23□□□□□ -0.13
VPS28-206ENST00000526734 OR11H4Q8NGC9 324 aa14.23□□□□□ -0.13
VPS28-206ENST00000526734 PTH2Q96A98 100 aa14.23□□□□□ -0.13
VPS28-206ENST00000526734 SFTA3P0C7M3 94 aa14.22□□□□□ -0.13
VPS28-206ENST00000526734 NEGR1Q7Z3B1 354 aa14.22□□□□□ -0.13
VPS28-206ENST00000526734 FMC1Q96HJ9 113 aa14.22□□□□□ -0.13
VPS28-206ENST00000526734 C11orf21Q9P2W6 132 aa14.22□□□□□ -0.13
VPS28-206ENST00000526734 ZFP30Q9Y2G7 519 aa14.22□□□□□ -0.13
VPS28-206ENST00000526734 FABP5P3A8MUU1 101 aa14.21□□□□□ -0.13
VPS28-206ENST00000526734 C9JCJ5 164 aa14.21□□□□□ -0.13
VPS28-206ENST00000526734 SRIP30626 198 aa14.21□□□□□ -0.13
VPS28-206ENST00000526734 MBD3L1Q8WWY6 194 aa14.21□□□□□ -0.13
VPS28-206ENST00000526734 C9orf85Q96MD7 179 aa14.21□□□□□ -0.13
VPS28-206ENST00000526734 TRAV34A0A0B4J273 112 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 TRBV6-1A0A0K0K1D8 114 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 PFDN1O60925 122 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 UBE2G1P62253 170 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 ZNF876PQ49A33 203 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 COX8CQ7Z4L0 72 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 SH2D6Q7Z4S9 175 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 FAM213BQ8TBF2 198 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 LINC00479Q96M42 142 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 TXNDC17Q9BRA2 123 aa14.2□□□□□ -0.14
VPS28-206ENST00000526734 DNAH17Q9UFH2 4485 aa14.19□□□□□ -0.14
VPS28-206ENST00000526734 TPT1P13693 172 aaKnown RBP14.19□□□□□ -0.14
VPS28-206ENST00000526734 PIK3CD-AS1Q5SR53 167 aa14.19□□□□□ -0.14
VPS28-206ENST00000526734 DNAH2Q9P225 4427 aa14.19□□□□□ -0.14
VPS28-206ENST00000526734 K7EQD1 137 aa14.18□□□□□ -0.14
VPS28-206ENST00000526734 SIVA1O15304 175 aa14.18□□□□□ -0.14
VPS28-206ENST00000526734 GYPEP15421 78 aa14.18□□□□□ -0.14
VPS28-206ENST00000526734 LGALSLQ3ZCW2 172 aaPredicted RBP14.18□□□□□ -0.14
VPS28-206ENST00000526734 CST9LP1Q5W188 147 aa14.18□□□□□ -0.14
VPS28-206ENST00000526734 SFT2D1Q8WV19 159 aa14.18□□□□□ -0.14
VPS28-206ENST00000526734 FAT2Q9NYQ8 4349 aa14.17□□□□□ -0.14
VPS28-206ENST00000526734 NXPH4O95158 308 aa14.17□□□□□ -0.14
VPS28-206ENST00000526734 GATA1P15976 413 aaPredicted RBP14.17□□□□□ -0.14
VPS28-206ENST00000526734 EIF5AL1Q6IS14 154 aaKnown RBP14.17□□□□□ -0.14
VPS28-206ENST00000526734 LYPD5Q6UWN5 251 aa14.17□□□□□ -0.14
VPS28-206ENST00000526734 TMUB2Q71RG4 321 aa14.17□□□□□ -0.14
VPS28-206ENST00000526734 RS1O15537 224 aa14.16□□□□□ -0.14
VPS28-206ENST00000526734 S100A9P06702 114 aaKnown RBP14.16□□□□□ -0.14
VPS28-206ENST00000526734 RNASE3P12724 160 aaKnown RBP14.16□□□□□ -0.14
VPS28-206ENST00000526734 S100A4P26447 101 aaKnown RBP14.16□□□□□ -0.14
VPS28-206ENST00000526734 ASIPP42127 132 aa14.16□□□□□ -0.14
VPS28-206ENST00000526734 AKR1C3P42330 323 aa14.16□□□□□ -0.14
VPS28-206ENST00000526734 K7EP13 123 aa14.15□□□□□ -0.14
VPS28-206ENST00000526734 PAGE4O60829 102 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms