RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ZNF680Q8NEM1 530 aa9.68□□□□□ -0.86
CPSF1-201ENST00000526271 ODF3Q96PU9 254 aa9.68□□□□□ -0.86
CPSF1-201ENST00000526271 MAP1LC3BQ9GZQ8 125 aa9.68□□□□□ -0.86
CPSF1-201ENST00000526271 MDFICQ9P1T7 246 aa9.68□□□□□ -0.86
CPSF1-201ENST00000526271 A0A087WTM6 91 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 SPINK4O60575 86 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 FGF8P55075 233 aaPredicted RBP9.67□□□□□ -0.86
CPSF1-201ENST00000526271 UBE2L3P68036 154 aaKnown RBP9.67□□□□□ -0.86
CPSF1-201ENST00000526271 CCDC28AQ8IWP9 274 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 SFT2D1Q8WV19 159 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 BLNKQ8WV28 456 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 PYGO2Q9BRQ0 406 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 TMEM167BQ9NRX6 74 aa9.67□□□□□ -0.86
CPSF1-201ENST00000526271 IGHV3-53P01767 116 aa9.66□□□□□ -0.86
CPSF1-201ENST00000526271 SMR3BP02814 79 aaPredicted RBP9.66□□□□□ -0.86
CPSF1-201ENST00000526271 LINC00467Q9BRT7 94 aa9.66□□□□□ -0.86
CPSF1-201ENST00000526271 AGPAT4-IT1Q9H0P7 198 aa9.66□□□□□ -0.86
CPSF1-201ENST00000526271 PGPEP1Q9NXJ5 209 aa9.66□□□□□ -0.86
CPSF1-201ENST00000526271 TRGV1A0A0A0MS02 117 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 C7orf71A4D174 169 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 IFNA7P01567 189 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 TCL1AP56279 114 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 RANP62826 216 aaKnown RBP9.65□□□□□ -0.86
CPSF1-201ENST00000526271 BLOC1S1P78537 153 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 LYPD5Q6UWN5 251 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 ZFAND2AQ8N6M9 145 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 LYPD6BQ8NI32 183 aa9.65□□□□□ -0.86
CPSF1-201ENST00000526271 A0A1W2PRE2 83 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 LEPP41159 167 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 CCL20P78556 96 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 IFITM2Q01629 132 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 FHL2Q14192 279 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 ANXA2RQ3ZCQ2 193 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 EXOC3-AS1Q8N2X6 119 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 MRPL53Q96EL3 112 aaKnown RBP9.64□□□□□ -0.87
CPSF1-201ENST00000526271 MRPL16Q9NX20 251 aaKnown RBP9.64□□□□□ -0.87
CPSF1-201ENST00000526271 PRELID1Q9Y255 219 aa9.64□□□□□ -0.87
CPSF1-201ENST00000526271 FAT3Q8TDW7 4589 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 TRGV2A0A075B6R0 118 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 SLC25A5P05141 298 aaKnown RBP9.63□□□□□ -0.87
CPSF1-201ENST00000526271 CRISP2P16562 243 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 CRYBA4P53673 196 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 ICAM4Q14773 271 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 CDPF1Q6NVV7 123 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 WFDC10BQ8IUB3 73 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 AAMDCQ9H7C9 122 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 OTORQ9NRC9 128 aa9.63□□□□□ -0.87
CPSF1-201ENST00000526271 HMCN2Q8NDA2 5059 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 PGPA6NDG6 321 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 FAM74A7A6NL05 159 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 TEX46H3BTG2 121 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 PAX4O43316 350 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 PPT1P50897 306 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 IQCF2Q8IXL9 164 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 EIF4E3Q8N5X7 224 aaKnown RBP9.62□□□□□ -0.87
CPSF1-201ENST00000526271 ARL6IP6Q8N6S5 226 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 C8orf49Q96NF6 230 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 VGLL1Q99990 258 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 ARL2-SNX15V9GYD0 113 aa9.62□□□□□ -0.87
CPSF1-201ENST00000526271 IGKV2-40A0A087WW87 121 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-201ENST00000526271 A0A1B0GV50 99 aa9.61□□□□□ -0.87
CPSF1-201ENST00000526271 IGKV2D-40P01614 121 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-201ENST00000526271 ERVFC1-1P60608 527 aa9.61□□□□□ -0.87
CPSF1-201ENST00000526271 SUMO1P63165 101 aaKnown RBP9.61□□□□□ -0.87
CPSF1-201ENST00000526271 NKX6-2Q9C056 277 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-201ENST00000526271 FAM30AQ9NZY2 134 aa9.61□□□□□ -0.87
CPSF1-201ENST00000526271 ICOSQ9Y6W8 199 aa9.61□□□□□ -0.87
CPSF1-201ENST00000526271 RNASE4P34096 147 aaKnown RBP9.6□□□□□ -0.87
CPSF1-201ENST00000526271 UBE2G2P60604 165 aa9.6□□□□□ -0.87
CPSF1-201ENST00000526271 C9orf47Q6ZRZ4 202 aa9.6□□□□□ -0.87
CPSF1-201ENST00000526271 LRCOL1A6NCL2 159 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 GGTLC3B5MD39 225 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 DIRC3C9JPN6 131 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 PAGE4O60829 102 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 NMBP08949 121 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 SFTA3P0C7M3 94 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 IBA57Q5T440 356 aaKnown RBP9.59□□□□□ -0.87
CPSF1-201ENST00000526271 MANBALQ9NQG1 85 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 PRO0255Q9UI72 69 aa9.59□□□□□ -0.87
CPSF1-201ENST00000526271 K7EQD1 137 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 CSN1S1P47710 185 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 C5orf17Q8NAS9 161 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 Q8TAT8 98 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 CMTM2Q8TAZ6 248 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 FRZBQ92765 325 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 ZNF479Q96JC4 524 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 GNG13Q9P2W3 67 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 EPDR1Q9UM22 224 aa9.58□□□□□ -0.88
CPSF1-201ENST00000526271 IGHV1OR15-1A0A075B7D0 117 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 RBAKDNA6NC62 111 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 CST9LP1Q5W188 147 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 PCNPQ8WW12 178 aaKnown RBP9.57□□□□□ -0.88
CPSF1-201ENST00000526271 LINC00477Q96M19 166 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 TXNDC17Q9BRA2 123 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 TCEAL7Q9BRU2 100 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 MSRB1Q9NZV6 116 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 ZNF492Q9P255 531 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 HHLA3Q9XRX5 114 aa9.57□□□□□ -0.88
CPSF1-201ENST00000526271 LOC100131303A0A0U1RQF7 123 aa9.56□□□□□ -0.88
CPSF1-201ENST00000526271 SERTM2A0A1B0GWG4 89 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms