RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 Q86TA4 180 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 FMC1Q96HJ9 113 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 LINC00467Q9BRT7 94 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 CELA1Q9UNI1 258 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 DYNC1H1Q14204 4646 aaKnown RBP7.23□□□□□ -1.25
VPS28-204ENST00000526054 IGHV1OR15-1A0A075B7D0 117 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 TRAV34A0A0B4J273 112 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 TRAV21A0A0B4J279 112 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 LYRM9A8MSI8 78 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 SNURFLB1AK76 121 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 ATP6V1G1O75348 118 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 PRM2P04554 102 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 S100A9P06702 114 aaKnown RBP7.22□□□□□ -1.25
VPS28-204ENST00000526054 AZU1P20160 251 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 ANXA2RQ3ZCQ2 193 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 SMUG1Q53HV7 270 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 RNASE8Q8TDE3 154 aaKnown RBP7.22□□□□□ -1.25
VPS28-204ENST00000526054 TVP23CQ96ET8 276 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 DKK2Q9UBU2 259 aa7.22□□□□□ -1.25
VPS28-204ENST00000526054 DEFB131BA0A096LNP1 70 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 TRBV6-1A0A0K0K1D8 114 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 SCO2A0A1W2PP80 73 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 TMEM218A2RU14 115 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 KRBOX1C9JBD0 128 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 TMEM250H0YL14 139 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 SRP19P09132 144 aaKnown RBP7.21□□□□□ -1.26
VPS28-204ENST00000526054 SFTA3P0C7M3 94 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 TMEM183BQ1AE95 376 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 FAM159AQ6UWV7 190 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 LINC00336Q6ZUF6 198 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 LINC00479Q96M42 142 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 C8orf49Q96NF6 230 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 NAGKQ9UJ70 344 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 ZFP30Q9Y2G7 519 aa7.21□□□□□ -1.26
VPS28-204ENST00000526054 TIMM8BQ9Y5J9 83 aaPredicted RBP7.21□□□□□ -1.26
VPS28-204ENST00000526054 TRGV11A0A075B6L2 103 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 PLAC8L1A1L4L8 177 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 C9JQL5 133 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 GCGP01275 180 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 PFN1P07737 140 aaKnown RBP7.2□□□□□ -1.26
VPS28-204ENST00000526054 CEBPGP53567 150 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 DAD1P61803 113 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 ZNF415Q09FC8 603 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 C12orf74Q32Q52 190 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 MUC21Q5SSG8 566 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 IBA57Q5T440 356 aaKnown RBP7.2□□□□□ -1.26
VPS28-204ENST00000526054 C11orf52Q96A22 123 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 NDUFAF3Q9BU61 184 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 KLF12Q9Y4X4 402 aa7.2□□□□□ -1.26
VPS28-204ENST00000526054 F8W036 122 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 LTAP01374 205 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 P0DMU3 169 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 FAM231AP0DMU4 169 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 FAM231CP0DMU5 169 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 S100A1P23297 94 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 TCL1AP56279 114 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 SOHLH1Q5JUK2 328 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 Q6ZQT7 251 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 KCNS1Q96KK3 526 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 SDF2L1Q9HCN8 221 aa7.19□□□□□ -1.26
VPS28-204ENST00000526054 NOP10Q9NPE3 64 aaKnown RBP7.19□□□□□ -1.26
VPS28-204ENST00000526054 DEFB130BP0DP73 79 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 DEFB130AP0DP74 79 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 ZNF80P51504 273 aaPredicted RBP7.18□□□□□ -1.26
VPS28-204ENST00000526054 DAZ2Q13117 558 aaKnown RBP7.18□□□□□ -1.26
VPS28-204ENST00000526054 TDRG1Q3Y452 100 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 FAM74A3Q4VXF1 159 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 TMEM183AQ8IXX5 376 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 POM121L12Q8N7R1 296 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 C11orf72Q8NBR9 251 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 SEC11CQ9BY50 192 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 GSN-AS1Q9NRJ2 163 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 TP53TG3Q9ULZ0 132 aa7.18□□□□□ -1.26
VPS28-204ENST00000526054 FABP5P3A8MUU1 101 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 ZNF727A8MUV8 499 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 RPL35P42766 123 aaKnown RBP7.17□□□□□ -1.26
VPS28-204ENST00000526054 ZNF674Q2M3X9 581 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 FAM162BQ5T6X4 162 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 COX8CQ7Z4L0 72 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 BAGE2Q86Y30 109 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 ZC2HC1AQ96GY0 325 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 SMIM7Q9BQ49 75 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 PARLQ9H300 379 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 CARHSP1Q9Y2V2 147 aaKnown RBP7.17□□□□□ -1.26
VPS28-204ENST00000526054 MUC4Q99102 2169 aa7.17□□□□□ -1.26
VPS28-204ENST00000526054 TRGV1A0A0A0MS02 117 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 A0A1B0GVY2 172 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 M0R2N4 97 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 TYMSP04818 313 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 ADCYAP1P18509 176 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 C10orf91Q5T1B1 145 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 LINC00612Q8N6U2 182 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 NHLRC2Q8NBF2 726 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 SPXQ9BT56 116 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 DNAH11Q96DT5 4516 aa7.16□□□□□ -1.26
VPS28-204ENST00000526054 IGHV3-16A0A0C4DH30 117 aa7.15□□□□□ -1.26
VPS28-204ENST00000526054 GAGE12BA1L429 117 aa7.15□□□□□ -1.26
VPS28-204ENST00000526054 PRSS29PA6NIE9 313 aa7.15□□□□□ -1.26
VPS28-204ENST00000526054 SPINK4O60575 86 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms