RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 NAGKQ9UJ70 344 aa20.48■□□□□ 0.87
SYNPO-203ENST00000518872 EPDR1Q9UM22 224 aa20.48■□□□□ 0.87
SYNPO-203ENST00000518872 HHLA3Q9XRX5 114 aa20.48■□□□□ 0.87
SYNPO-203ENST00000518872 IGLV2-11P01706 119 aa20.47■□□□□ 0.87
SYNPO-203ENST00000518872 ZNF726P1Q15940 193 aa20.47■□□□□ 0.87
SYNPO-203ENST00000518872 CYB561D1Q8N8Q1 229 aa20.47■□□□□ 0.87
SYNPO-203ENST00000518872 BTF3P20290 206 aaKnown RBP20.46■□□□□ 0.87
SYNPO-203ENST00000518872 TMEM75Q8N9X5 138 aa20.46■□□□□ 0.87
SYNPO-203ENST00000518872 SDF2L1Q9HCN8 221 aa20.46■□□□□ 0.87
SYNPO-203ENST00000518872 PSG8Q9UQ74 426 aa20.46■□□□□ 0.87
SYNPO-203ENST00000518872 KIAA1109Q2LD37 5005 aa20.46■□□□□ 0.87
SYNPO-203ENST00000518872 M0R2P5 195 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 ARPC5O15511 151 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 GNRH2O43555 120 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 TYMSP04818 313 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 SGK494Q96LW2 274 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 CYTL1Q9NRR1 136 aa20.45■□□□□ 0.86
SYNPO-203ENST00000518872 FLI1Q01543 452 aaPredicted RBP20.44■□□□□ 0.86
SYNPO-203ENST00000518872 KRTAP1-5Q9BYS1 174 aa20.44■□□□□ 0.86
SYNPO-203ENST00000518872 DYNC1H1Q14204 4646 aaKnown RBP20.44■□□□□ 0.86
SYNPO-203ENST00000518872 MRPL23Q16540 153 aaKnown RBP20.43■□□□□ 0.86
SYNPO-203ENST00000518872 AKR1C8PQ5T2L2 129 aa20.43■□□□□ 0.86
SYNPO-203ENST00000518872 ZNF479Q96JC4 524 aa20.43■□□□□ 0.86
SYNPO-203ENST00000518872 C8orf49Q96NF6 230 aa20.43■□□□□ 0.86
SYNPO-203ENST00000518872 TRAV4A0A0B4J268 109 aa20.42■□□□□ 0.86
SYNPO-203ENST00000518872 TRGV4A0A0C4DH28 118 aa20.42■□□□□ 0.86
SYNPO-203ENST00000518872 PFN1P07737 140 aaKnown RBP20.41■□□□□ 0.86
SYNPO-203ENST00000518872 SFTA3P0C7M3 94 aa20.41■□□□□ 0.86
SYNPO-203ENST00000518872 ZNF80P51504 273 aaPredicted RBP20.41■□□□□ 0.86
SYNPO-203ENST00000518872 TNP2Q05952 138 aa20.41■□□□□ 0.86
SYNPO-203ENST00000518872 NKX6-2Q9C056 277 aaPredicted RBP20.41■□□□□ 0.86
SYNPO-203ENST00000518872 GCGP01275 180 aa20.4■□□□□ 0.86
SYNPO-203ENST00000518872 ZNF345Q14585 488 aa20.4■□□□□ 0.86
SYNPO-203ENST00000518872 ZFP69Q49AA0 526 aa20.4■□□□□ 0.86
SYNPO-203ENST00000518872 SMUG1Q53HV7 270 aa20.4■□□□□ 0.86
SYNPO-203ENST00000518872 SAPCD1Q5SSQ6 148 aa20.4■□□□□ 0.86
SYNPO-203ENST00000518872 MED14OSP0DP75 135 aa20.39■□□□□ 0.85
SYNPO-203ENST00000518872 C11orf21Q9P2W6 132 aa20.39■□□□□ 0.85
SYNPO-203ENST00000518872 ORM1P02763 201 aa20.38■□□□□ 0.85
SYNPO-203ENST00000518872 NEGR1Q7Z3B1 354 aa20.38■□□□□ 0.85
SYNPO-203ENST00000518872 PRNTQ86SH4 94 aa20.38■□□□□ 0.85
SYNPO-203ENST00000518872 KCNRGQ8N5I3 272 aa20.37■□□□□ 0.85
SYNPO-203ENST00000518872 OR4C5Q8NGB2 326 aa20.37■□□□□ 0.85
SYNPO-203ENST00000518872 FAM74A7A6NL05 159 aa20.36■□□□□ 0.85
SYNPO-203ENST00000518872 K7EQD1 137 aa20.36■□□□□ 0.85
SYNPO-203ENST00000518872 SIVA1O15304 175 aa20.36■□□□□ 0.85
SYNPO-203ENST00000518872 LYPD5Q6UWN5 251 aa20.36■□□□□ 0.85
SYNPO-203ENST00000518872 HIST1H2BAQ96A08 127 aa20.36■□□□□ 0.85
SYNPO-203ENST00000518872 HMSDA8MTL9 139 aa20.35■□□□□ 0.85
SYNPO-203ENST00000518872 PTH2Q96A98 100 aa20.35■□□□□ 0.85
SYNPO-203ENST00000518872 MAP1LC3B2A6NCE7 125 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 SMLR1H3BR10 107 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 NXPH4O95158 308 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 PPT1P50897 306 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 FGF8P55075 233 aaPredicted RBP20.34■□□□□ 0.85
SYNPO-203ENST00000518872 C9orf85Q96MD7 179 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 MAP1LC3BQ9GZQ8 125 aa20.34■□□□□ 0.85
SYNPO-203ENST00000518872 C9JCJ5 164 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 PEX7O00628 323 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 CIDEAO60543 219 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 IFNA7P01567 189 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 SRIP30626 198 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 UBE2G2P60604 165 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 PCNPQ8WW12 178 aaKnown RBP20.33■□□□□ 0.85
SYNPO-203ENST00000518872 LINC00479Q96M42 142 aa20.33■□□□□ 0.85
SYNPO-203ENST00000518872 GYPEP15421 78 aa20.32■□□□□ 0.84
SYNPO-203ENST00000518872 ARL2-SNX15V9GYD0 113 aa20.32■□□□□ 0.84
SYNPO-203ENST00000518872 TCEAL7Q9BRU2 100 aa20.31■□□□□ 0.84
SYNPO-203ENST00000518872 TRAV34A0A0B4J273 112 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 SEC11BP0C7V7 166 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 GATA1P15976 413 aaPredicted RBP20.3■□□□□ 0.84
SYNPO-203ENST00000518872 FHITP49789 147 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 ZNF876PQ49A33 203 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 COX8CQ7Z4L0 72 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 OR11H4Q8NGC9 324 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 STOML3Q8TAV4 291 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 TXNDC17Q9BRA2 123 aa20.3■□□□□ 0.84
SYNPO-203ENST00000518872 A0A0D9SG52 128 aa20.29■□□□□ 0.84
SYNPO-203ENST00000518872 RNASE3P12724 160 aaKnown RBP20.29■□□□□ 0.84
SYNPO-203ENST00000518872 Q86TA4 180 aa20.29■□□□□ 0.84
SYNPO-203ENST00000518872 ZNF575Q86XF7 245 aa20.29■□□□□ 0.84
SYNPO-203ENST00000518872 RS1O15537 224 aa20.28■□□□□ 0.84
SYNPO-203ENST00000518872 SH2D6Q7Z4S9 175 aa20.28■□□□□ 0.84
SYNPO-203ENST00000518872 FABP5P3A8MUU1 101 aa20.27■□□□□ 0.84
SYNPO-203ENST00000518872 UMAD1C9J7I0 102 aa20.27■□□□□ 0.84
SYNPO-203ENST00000518872 ZFP30Q9Y2G7 519 aa20.27■□□□□ 0.84
SYNPO-203ENST00000518872 IGKV3D-20A0A0C4DH25 116 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 K7EP13 123 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 LINC00315P59091 139 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 PIK3CD-AS1Q5SR53 167 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 CFAP126Q5VTH2 177 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 DPPA3Q6W0C5 159 aa20.26■□□□□ 0.83
SYNPO-203ENST00000518872 TRBV6-1A0A0K0K1D8 114 aa20.25■□□□□ 0.83
SYNPO-203ENST00000518872 TIRAPP58753 221 aa20.25■□□□□ 0.83
SYNPO-203ENST00000518872 MBD3L1Q8WWY6 194 aa20.25■□□□□ 0.83
SYNPO-203ENST00000518872 FMC1Q96HJ9 113 aa20.25■□□□□ 0.83
SYNPO-203ENST00000518872 BCL2L11O43521 198 aa20.24■□□□□ 0.83
SYNPO-203ENST00000518872 ZNF506Q5JVG8 444 aa20.24■□□□□ 0.83
SYNPO-203ENST00000518872 Q6ZRN7 208 aaPredicted RBP20.24■□□□□ 0.83
SYNPO-203ENST00000518872 TRBV6-4A0A1B0GX49 114 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms