RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 NAGKQ9UJ70 344 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 KLK5Q9Y337 293 aaPredicted RBP5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 TIMM8BQ9Y5J9 83 aaPredicted RBP5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 X6R8D5 127 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 DYNC2H1Q8NCM8 4307 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 TRAV8-1A0A0A6YYK1 113 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 FABP5P3A8MUU1 101 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 PRB4P10163 310 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 S100A4P26447 101 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 RPL35P42766 123 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 TDRG1Q3Y452 100 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 FAM74A3Q4VXF1 159 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 COX8CQ7Z4L0 72 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 MUC7Q8TAX7 377 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 RNASE8Q8TDE3 154 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 DAZAP1Q96EP5 407 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 SPXQ9BT56 116 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 EDA2RQ9HAV5 297 aa5.6□□□□□ -1.51
LIMCH1-222ENST00000515847 TRAV34A0A0B4J273 112 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 C9JCJ5 164 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 ASIPP42127 132 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 EMP1P54849 157 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 RPS20P60866 119 aaKnown RBP5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 DAD1P61803 113 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 CENPWQ5EE01 88 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 CLLU1Q5K131 121 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 CSMD3Q7Z407 3707 aa5.59□□□□□ -1.51
LIMCH1-222ENST00000515847 TRAV10A0A0B4J240 114 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 ZNF705GA8MUZ8 300 aaPredicted RBP5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 EIF4EBP3O60516 100 aaPredicted RBP5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 ZNF324O75467 553 aaPredicted RBP5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 IGLV2-11P01706 119 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 CXCL1P09341 107 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 MGST1P10620 155 aaKnown RBP5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 CEBPGP53567 150 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 TCL1AP56279 114 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 TCTAP57738 103 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 DAZ2Q13117 558 aaKnown RBP5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 OR5I1Q13606 314 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 LGALS9BQ3B8N2 356 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 FAM222AQ5U5X8 452 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 SYT8Q8NBV8 401 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 FAM210BQ96KR6 192 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 DKK2Q9UBU2 259 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 LY96Q9Y6Y9 160 aa5.58□□□□□ -1.52
LIMCH1-222ENST00000515847 STARD9Q9P2P6 4700 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 TRGV2A0A075B6R0 118 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 RAB19A4D1S5 217 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 B4DEV8 164 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 CIDEAO60543 219 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 SH2D1AO60880 128 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 ORM1P02763 201 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 ATP5G1P05496 136 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 RBMY1A1P0DJD3 496 aaKnown RBP5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 RBMY1CP0DJD4 496 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 MED14OSP0DP75 135 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 RBMY1FQ15415 496 aaKnown RBP5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 ZNF674Q2M3X9 581 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 MUC21Q5SSG8 566 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 PRR9Q5T870 116 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 SGK494Q96LW2 274 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 LINC00479Q96M42 142 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 SMIM7Q9BQ49 75 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 PARLQ9H300 379 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 TP53TG3Q9ULZ0 132 aa5.57□□□□□ -1.52
LIMCH1-222ENST00000515847 TRGV1A0A0A0MS02 117 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 ZNF727A8MUV8 499 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 M0R2P5 195 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 P01737 135 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 SLAQ13239 276 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 PIK3CD-AS1Q5SR53 167 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 PRR27Q6MZM9 219 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 UQCC3Q6UW78 93 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 ZC2HC1AQ96GY0 325 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 C8orf49Q96NF6 230 aa5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 NOP10Q9NPE3 64 aaKnown RBP5.56□□□□□ -1.52
LIMCH1-222ENST00000515847 DNAH1Q9P2D7 4330 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 A0A1W2PPQ1 181 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 DEFB4AO15263 64 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 TYMSP04818 313 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 PNRC1Q12796 327 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 KIR3DS1Q14943 382 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 SOHLH1Q5JUK2 328 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 ZFP82Q8N141 532 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 C15orf54Q8N8G6 183 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 PTH2Q96A98 100 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 BORCS7Q96B45 105 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 TVP23CQ96ET8 276 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 C18orf15Q96N68 181 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 MLST8Q9BVC4 326 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 GSN-AS1Q9NRJ2 163 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 IL36BQ9NZH7 164 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 PHLDA3Q9Y5J5 127 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 ALMS1Q8TCU4 4167 aa5.55□□□□□ -1.52
LIMCH1-222ENST00000515847 DEFB131BA0A096LNP1 70 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 IGHV3-16A0A0C4DH30 117 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 A8MWV9 139 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 M0R036 132 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 RHODO00212 210 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 SPINK4O60575 86 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms