RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NUPR2A6NF83 97 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 CBY3A6NI87 242 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 ZNF674Q2M3X9 581 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 ANXA2RQ3ZCQ2 193 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 FAM74A3Q4VXF1 159 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 FAM162BQ5T6X4 162 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 PARLQ9H300 379 aa14.53□□□□□ -0.08
USP53-208ENST00000514305 TRGV11A0A075B6L2 103 aa14.52□□□□□ -0.09
USP53-208ENST00000514305 C9JCJ5 164 aa14.52□□□□□ -0.09
USP53-208ENST00000514305 SRP19P09132 144 aaKnown RBP14.52□□□□□ -0.09
USP53-208ENST00000514305 CENPWQ5EE01 88 aa14.52□□□□□ -0.09
USP53-208ENST00000514305 PRR9Q5T870 116 aa14.52□□□□□ -0.09
USP53-208ENST00000514305 TMEM263Q8WUH6 116 aaKnown RBP14.52□□□□□ -0.09
USP53-208ENST00000514305 DAZAP1Q96EP5 407 aaKnown RBP14.52□□□□□ -0.09
USP53-208ENST00000514305 SDF2L1Q9HCN8 221 aa14.52□□□□□ -0.09
USP53-208ENST00000514305 EPPK1P58107 5090 aaKnown RBP14.51□□□□□ -0.09
USP53-208ENST00000514305 IGHV4-28A0A0C4DH34 117 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 ZNF705GA8MUZ8 300 aaPredicted RBP14.51□□□□□ -0.09
USP53-208ENST00000514305 RBMY1A1P0DJD3 496 aaKnown RBP14.51□□□□□ -0.09
USP53-208ENST00000514305 RBMY1CP0DJD4 496 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 RBMY1FQ15415 496 aaKnown RBP14.51□□□□□ -0.09
USP53-208ENST00000514305 SMIM7Q9BQ49 75 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 DERL1Q9BUN8 251 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 MLST8Q9BVC4 326 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 NAGKQ9UJ70 344 aa14.51□□□□□ -0.09
USP53-208ENST00000514305 ZNF727A8MUV8 499 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 SNURFLB1AK76 121 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 MGST1P10620 155 aaKnown RBP14.5□□□□□ -0.09
USP53-208ENST00000514305 Q8NAQ8 132 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 LINC00476Q8WZB0 136 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 ZC2HC1AQ96GY0 325 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 LY96Q9Y6Y9 160 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 ALMS1Q8TCU4 4167 aa14.5□□□□□ -0.09
USP53-208ENST00000514305 TDRG1Q3Y452 100 aa14.49□□□□□ -0.09
USP53-208ENST00000514305 UQCC3Q6UW78 93 aa14.49□□□□□ -0.09
USP53-208ENST00000514305 ORM1P02763 201 aa14.48□□□□□ -0.09
USP53-208ENST00000514305 SOHLH1Q5JUK2 328 aa14.48□□□□□ -0.09
USP53-208ENST00000514305 MUC21Q5SSG8 566 aa14.48□□□□□ -0.09
USP53-208ENST00000514305 IBA57Q5T440 356 aaKnown RBP14.48□□□□□ -0.09
USP53-208ENST00000514305 NHLRC2Q8NBF2 726 aa14.48□□□□□ -0.09
USP53-208ENST00000514305 TIMM8BQ9Y5J9 83 aaPredicted RBP14.48□□□□□ -0.09
USP53-208ENST00000514305 LY6G6CO95867 125 aa14.47□□□□□ -0.09
USP53-208ENST00000514305 SPART-AS1P0CW21 52 aa14.47□□□□□ -0.09
USP53-208ENST00000514305 ZNF80P51504 273 aaPredicted RBP14.47□□□□□ -0.09
USP53-208ENST00000514305 ZNF415Q09FC8 603 aa14.47□□□□□ -0.09
USP53-208ENST00000514305 PRR27Q6MZM9 219 aa14.47□□□□□ -0.09
USP53-208ENST00000514305 CEMP1Q6PRD7 247 aaPredicted RBP14.47□□□□□ -0.09
USP53-208ENST00000514305 KLK5Q9Y337 293 aaPredicted RBP14.47□□□□□ -0.09
USP53-208ENST00000514305 LYRM9A8MSI8 78 aa14.46□□□□□ -0.09
USP53-208ENST00000514305 SH2D1AO60880 128 aa14.46□□□□□ -0.09
USP53-208ENST00000514305 RNASE8Q8TDE3 154 aaKnown RBP14.46□□□□□ -0.09
USP53-208ENST00000514305 XKRY2A2RUG3 117 aa14.45□□□□□ -0.1
USP53-208ENST00000514305 B4DEV8 164 aa14.45□□□□□ -0.1
USP53-208ENST00000514305 S100A4P26447 101 aaKnown RBP14.45□□□□□ -0.1
USP53-208ENST00000514305 EMP1P54849 157 aa14.45□□□□□ -0.1
USP53-208ENST00000514305 TMEM241Q24JQ0 296 aa14.45□□□□□ -0.1
USP53-208ENST00000514305 SPXQ9BT56 116 aa14.45□□□□□ -0.1
USP53-208ENST00000514305 AZU1P20160 251 aa14.44□□□□□ -0.1
USP53-208ENST00000514305 OR5I1Q13606 314 aa14.44□□□□□ -0.1
USP53-208ENST00000514305 Q8N3U1 123 aa14.44□□□□□ -0.1
USP53-208ENST00000514305 PLECQ15149 4684 aaKnown RBP14.44□□□□□ -0.1
USP53-208ENST00000514305 LINC00862A6NCI5 91 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 DEFB4AO15263 64 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 CRIP1P50238 77 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 RPS20P60866 119 aaKnown RBP14.43□□□□□ -0.1
USP53-208ENST00000514305 SRSF3P84103 164 aaKnown RBP14.43□□□□□ -0.1
USP53-208ENST00000514305 DAZ2Q13117 558 aaKnown RBP14.43□□□□□ -0.1
USP53-208ENST00000514305 OCC1Q8TAD7 63 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 C11orf45Q8TAV5 145 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 NAT8Q9UHE5 227 aa14.43□□□□□ -0.1
USP53-208ENST00000514305 TRBV20OR9-2A0A075B6H5 130 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 IGLV2-8P01709 118 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 P01737 135 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 ASIPP42127 132 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 TCL1AP56279 114 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 COMMD7Q86VX2 200 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 TP53TG3Q9ULZ0 132 aa14.42□□□□□ -0.1
USP53-208ENST00000514305 TYMSP04818 313 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 CXCL1P09341 107 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 Q6ZQT7 251 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 GSN-AS1Q9NRJ2 163 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 DKK2Q9UBU2 259 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 BIRC6Q9NR09 4857 aa14.41□□□□□ -0.1
USP53-208ENST00000514305 KRBOX1C9JBD0 128 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 C9JQL5 133 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 M0R036 132 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 GNRH2O43555 120 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 PRM2P04554 102 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 SFTA3P0C7M3 94 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 LGALS9BQ3B8N2 356 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 FAM222AQ5U5X8 452 aa14.4□□□□□ -0.1
USP53-208ENST00000514305 PHLDA1Q8WV24 401 aaPredicted RBP14.4□□□□□ -0.1
USP53-208ENST00000514305 NOP10Q9NPE3 64 aaKnown RBP14.4□□□□□ -0.1
USP53-208ENST00000514305 IGKV3D-20A0A0C4DH25 116 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 PGPEP1LA6NFU8 196 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 DAD1P61803 113 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 DNLZQ5SXM8 178 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 LINC01551Q86U37 167 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 C11orf72Q8NBR9 251 aa14.39□□□□□ -0.11
USP53-208ENST00000514305 C11orf21Q9P2W6 132 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms