RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 IL17DQ8TAD2 202 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 RNASE8Q8TDE3 154 aaKnown RBP7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 FMC1Q96HJ9 113 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 PYGO2Q9BRQ0 406 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 TCEAL7Q9BRU2 100 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 MED9Q9NWA0 146 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 C11orf21Q9P2W6 132 aa7.02□□□□□ -1.29
TOPBP1-209ENST00000513818 SMIM9A6NGZ8 99 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 LTAP01374 205 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 CRIP1P50238 77 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 ANXA2RQ3ZCQ2 193 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 FAM222AQ5U5X8 452 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 TMEM183AQ8IXX5 376 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 EIF4E3Q8N5X7 224 aaKnown RBP7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 C11orf45Q8TAV5 145 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 TMEM263Q8WUH6 116 aaKnown RBP7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 C16orf74Q96GX8 76 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 FAM210AQ96ND0 272 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 EIF5A2Q9GZV4 153 aaKnown RBP7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 KLF12Q9Y4X4 402 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 CSMD3Q7Z407 3707 aa7.01□□□□□ -1.29
TOPBP1-209ENST00000513818 TRBV20OR9-2A0A075B6H5 130 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 TRAV21A0A0B4J279 112 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 TRBV6-1A0A0K0K1D8 114 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 CXorf65A6NEN9 183 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 FBLL1A6NHQ2 334 aaKnown RBP7□□□□□ -1.29
TOPBP1-209ENST00000513818 M0R036 132 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 PDE6DO43924 150 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 SH2D1AO60880 128 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 TYMSP04818 313 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 SRSF3P84103 164 aaKnown RBP7□□□□□ -1.29
TOPBP1-209ENST00000513818 SAPCD1Q5SSQ6 148 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 PRR27Q6MZM9 219 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 Q6ZTC4 211 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 BAGE2Q86Y30 109 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 NOP10Q9NPE3 64 aaKnown RBP7□□□□□ -1.29
TOPBP1-209ENST00000513818 GSN-AS1Q9NRJ2 163 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 DKK2Q9UBU2 259 aa7□□□□□ -1.29
TOPBP1-209ENST00000513818 TMSB15BA0A087X1C1 80 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 C9JQL5 133 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 GNRH2O43555 120 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 PFN1P07737 140 aaKnown RBP6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 MGST1P10620 155 aaKnown RBP6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 C12orf74Q32Q52 190 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 FAM159AQ6UWV7 190 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 C11orf72Q8NBR9 251 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 MUC7Q8TAX7 377 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 TXNDC17Q9BRA2 123 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 PARLQ9H300 379 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 MDFICQ9P1T7 246 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 ZFP30Q9Y2G7 519 aa6.99□□□□□ -1.29
TOPBP1-209ENST00000513818 TMEM189A5PLL7 270 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 PRSS29PA6NIE9 313 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 SNURFLB1AK76 121 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 H3BS24 57 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 IGLV2-8P01709 118 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 SRP19P09132 144 aaKnown RBP6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 DEFB130BP0DP73 79 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 DEFB130AP0DP74 79 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 HTN3P15516 51 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 TAGLN2P37802 199 aaKnown RBP6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 RPL19P84098 196 aaKnown RBP6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 ZNF415Q09FC8 603 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 LINC00467Q9BRT7 94 aa6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 MRPL16Q9NX20 251 aaKnown RBP6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 TIMM8BQ9Y5J9 83 aaPredicted RBP6.98□□□□□ -1.29
TOPBP1-209ENST00000513818 IGKV3D-20A0A0C4DH25 116 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 IGHV3-16A0A0C4DH30 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE12BA1L429 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GRIFINA4D1Z8 144 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE10A6NGK3 116 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE7O76087 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 S100A9P06702 114 aaKnown RBP6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE12FP0CL80 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE12GP0CL81 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GAGE12IP0CL82 117 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 SPART-AS1P0CW21 52 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 GNG4P50150 75 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 TCL1AP56279 114 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 RAB14P61106 215 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 OR5I1Q13606 314 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 FAM162BQ5T6X4 162 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 ZNF493Q6ZR52 646 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 Q6ZTI0 123 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 SPXQ9BT56 116 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 MLST8Q9BVC4 326 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 SDF2L1Q9HCN8 221 aa6.97□□□□□ -1.29
TOPBP1-209ENST00000513818 TRGV11A0A075B6L2 103 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 TRGV1A0A0A0MS02 117 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 FABP5P3A8MUU1 101 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 B4DEV8 164 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 TMEM250H0YL14 139 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 ORM1P02763 201 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 DAD1P61803 113 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 CLLU1Q5K131 121 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 COX8CQ7Z4L0 72 aa6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 PHLDA1Q8WV24 401 aaPredicted RBP6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 KMT2CQ8NEZ4 4911 aaKnown RBP6.96□□□□□ -1.3
TOPBP1-209ENST00000513818 LYRM9A8MSI8 78 aa6.95□□□□□ -1.3
TOPBP1-209ENST00000513818 KRBOX1C9JBD0 128 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms