RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RNF152Q8N8N0 203 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 PINLYPA6NC86 204 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 H0YGX0 51 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 NDUFA7O95182 113 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 LMO1P25800 156 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 FXYD2P54710 66 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 Q71RC1 249 aaPredicted RBP7□□□□□ -1.29
LIMCH1-218ENST00000513024 SRRM5B3KS81 715 aa7□□□□□ -1.29
LIMCH1-218ENST00000513024 FUSP35637 526 aaKnown RBP eCLIP7□□□□□ -1.29
LIMCH1-218ENST00000513024 VPREB1P12018 145 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 PAX8Q06710 450 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 C15orf32Q32M92 178 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 PLA2G2CQ5R387 149 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 HIGD1BQ9P298 99 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 IGHV1-18A0A0C4DH31 117 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 MINOS1Q5TGZ0 78 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 MINOS1-NBL1R4GNA1 71 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 KIAA1671Q9BY89 1806 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 A0A087WWL8 130 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 LYRM9A8MSI8 78 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 MSMBP08118 114 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 PDE6HQ13956 83 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 PRR30Q53SZ7 412 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 CD177Q8N6Q3 437 aa6.99□□□□□ -1.29
LIMCH1-218ENST00000513024 IGHV1-46P01743 117 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 Q0VFX4 171 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 SLC25A29Q8N8R3 303 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 VSIG2Q96IQ7 327 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 SMIM2Q9BVW6 85 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 CHD3Q12873 2000 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 COL4A3Q01955 1670 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 IGFL3Q6UXB1 125 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 C10orf105Q8TEF2 133 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 PROP1O75360 226 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 NREPQ16612 68 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 ZNF672Q499Z4 452 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 EYSQ5T1H1 3165 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 PYGO2Q9BRQ0 406 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 SDHAF1A6NFY7 115 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 JMJD7-PLA2G4BH0Y9G9 81 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 NXPH4O95158 308 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 CFPP27918 469 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 FHL1Q13642 323 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 ICOSQ9Y6W8 199 aa6.98□□□□□ -1.29
LIMCH1-218ENST00000513024 FAM110DQ8TAY7 271 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 ZC2HC1AQ96GY0 325 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 A4D1N5 150 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 I3L3M4 83 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 APOC4P55056 127 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 RMI2Q96E14 147 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 A0A0C4DFX4 3053 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 CENPVL3A0A0U1RRI6 287 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 ATP5EP56381 51 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 SEC61GP60059 68 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 DEFB113Q30KQ7 82 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 HRCT1Q6UXD1 115 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 GGNQ86UU5 652 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 TIMM17BO60830 172 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 IGKV1-16P04430 117 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 C5orf64Q2M2E5 130 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 TMEM200BQ69YZ2 307 aa6.97□□□□□ -1.29
LIMCH1-218ENST00000513024 ELANEP08246 267 aa6.96□□□□□ -1.29
LIMCH1-218ENST00000513024 ZNF726P1Q15940 193 aa6.96□□□□□ -1.29
LIMCH1-218ENST00000513024 Q6P435 159 aa6.96□□□□□ -1.29
LIMCH1-218ENST00000513024 OBSL1O75147 1896 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 TRGV1A0A0A0MS02 117 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 IGKV1-6A0A0C4DH72 117 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 PIP4P1Q86T03 277 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 C11orf44Q8N8P7 122 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 TMEM75Q8N9X5 138 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 IGLC6P0CF74 106 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 PAX9P55771 341 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 SPRR3Q9UBC9 169 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 TRAV23DV6A0A075B6W5 121 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 ASPHD1Q5U4P2 390 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 NKAPP1Q8N9T2 125 aa6.96□□□□□ -1.3
LIMCH1-218ENST00000513024 IGHV1-3A0A0C4DH29 117 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 H0YJW9 148 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 WIPF2Q8TF74 440 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 TRBV6-6A0A0A6YYG2 114 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 IGHV1-8P0DP01 117 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 MBD3L4A6NDZ8 208 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 MBD3L3A6NE82 208 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 MBD3L5A6NJ08 208 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 IGHV3-53P01767 116 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 MBD3L2Q8NHZ7 208 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 CFHR4Q92496 578 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 KLK5Q9Y337 293 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 C11orf52Q96A22 123 aa6.95□□□□□ -1.3
LIMCH1-218ENST00000513024 SMIM26A0A096LP01 95 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 K7ERS5 55 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 PMAIP1Q13794 54 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 TNRC6AQ8NDV7 1962 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 A0A0G2JNJ9 132 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 NUPR1O60356 82 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 KLHL30-AS1Q8NEE0 82 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 Q9UFV3 132 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 DYSFO75923 2080 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 A6NED7 52 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 IGF2-ASQ6U949 168 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms