RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 C9orf47Q6ZRZ4 202 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 MAPK1IP1LQ8NDC0 245 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 PRADC1Q9BSG0 188 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 C1QTNF4Q9BXJ3 329 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 LY6LH3BQJ8 138 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 TAL2Q16559 108 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 MORN3Q6PF18 240 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 TOMM7Q9P0U1 55 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 DKK2Q9UBU2 259 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 VPREB3Q9UKI3 123 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 DEFB112Q30KQ8 113 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 COL6A6A6NMZ7 2263 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 OR13C6PQ8NH95 151 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 Q96MF0 132 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 MLST8Q9BVC4 326 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 TIMM21Q9BVV7 248 aa8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 TNRC6BQ9UPQ9 1833 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-205ENST00000503057 DLX4Q92988 240 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV4-30-2A0A087WSY4 118 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 FOXI2Q6ZQN5 318 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 PCNX1Q96RV3 2341 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 TRAV12-2A0A075B6T6 113 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 SCRT2Q9NQ03 307 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 IGHV4-59P01825 116 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 LINC00173Q6ZV60 143 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 MBD6Q96DN6 1003 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 PGPEP1Q9NXJ5 209 aa8.34□□□□□ -1.07
LIMCH1-205ENST00000503057 LGALS1P09382 135 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 M0R2P5 195 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RASL10AQ92737 203 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 F6UB75 175 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RBMY1BA6NDE4 496 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RBMY1EA6NEQ0 496 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RBMY1DP0C7P1 496 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RBMY1A1P0DJD3 496 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 RBMY1CP0DJD4 496 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 CEND1Q8N111 149 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 PRAC2D3DTV9 90 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 GNRH2O43555 120 aa8.33□□□□□ -1.08
LIMCH1-205ENST00000503057 MYCNOSP40205 109 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 RIPPLY3P57055 190 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 CFAP161Q6P656 301 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 AJUBAQ96IF1 538 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 UBE2E2Q96LR5 201 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 CHCHD5Q9BSY4 110 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 K7EP34 96 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 LINC00322Q6ZN03 302 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 SIGMAR1Q99720 223 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 MSRB1Q9NZV6 116 aa8.32□□□□□ -1.08
LIMCH1-205ENST00000503057 SCGB1A1P11684 91 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 BOD1L2Q8IYS8 172 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 CACNA1GO43497 2377 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 DNAH12Q6ZR08 3092 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 IGHG2P01859 326 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 GATA1P15976 413 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 SPXQ9BT56 116 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 CST9LQ9H4G1 147 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 MED14OSP0DP75 135 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 NEGR1Q7Z3B1 354 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 TRBV7-9A0A0J9YWB2 115 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 KNCNA6PVL3 124 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 K7EMT4 169 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 BLCAPP62952 87 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 EBI3Q14213 229 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 GDF5OSQ5U4N7 250 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 DEFB125Q8N687 156 aa8.31□□□□□ -1.08
LIMCH1-205ENST00000503057 TRAV8-2A0A0B4J237 113 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 HOXD3P31249 432 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 C11orf71Q6IPW1 123 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 PHLDA1Q8WV24 401 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 IGHV3-53P01767 116 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 RPL35AP18077 110 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 C1orf159Q96HA4 380 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 TMEM89A2RUT3 159 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 RHOHQ15669 191 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 ATXN8Q156A1 80 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 OCIAD2Q56VL3 154 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 A0A1W2PPM0 123 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 TSPAN13O95857 204 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 LMO4P61968 165 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 CCDC140Q96MF4 163 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 XCL2Q9UBD3 114 aa8.3□□□□□ -1.08
LIMCH1-205ENST00000503057 SPTBN1Q01082 2364 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 C2orf70A6NJV1 201 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 TNFRSF13BO14836 293 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 TMEM95Q3KNT9 176 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 MALP21145 153 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 ADAMTSL5Q6ZMM2 481 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 PRORYQ9H606 182 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 UTRNP46939 3433 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 C10orf126Q8N4M7 172 aa8.29□□□□□ -1.08
LIMCH1-205ENST00000503057 WNK2Q9Y3S1 2297 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 A6NDX4 124 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 AZU1P20160 251 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 PCP2Q8IVA1 136 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 HCFC1P51610 2035 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 PRSS29PA6NIE9 313 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 TP53TG3Q9ULZ0 132 aa8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 RNASE1P07998 156 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-205ENST00000503057 GPHB5Q86YW7 130 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms