RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 TIMM23O14925 209 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 ACTL6BO94805 426 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 SMIM13P0DJ93 91 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 GCHFRP30047 84 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 ZNF137PP52743 207 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 BLCAPP62952 87 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 CATR1Q13166 79 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 ZNF562Q6V9R5 426 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 SLC25A48Q6ZT89 311 aaKnown RBP3.8□□□□□ -1.8
CSMD3-208ENST00000497026 C2orf91Q6ZV80 131 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 LINC00311Q8N616 119 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 C8orf31Q8N9H6 132 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 OR4C13Q8NGP0 309 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 RPEQ96AT9 228 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 CITED2Q99967 270 aaPredicted RBP3.8□□□□□ -1.8
CSMD3-208ENST00000497026 CCL28Q9NRJ3 127 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 PSG8Q9UQ74 426 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 WDR83OSQ9Y284 106 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 OR2W1Q9Y3N9 320 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 TENM1Q9UKZ4 2725 aa3.8□□□□□ -1.8
CSMD3-208ENST00000497026 A0A087WYN8 130 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 TRBV6-6A0A0A6YYG2 114 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 IGHV1-3A0A0C4DH29 117 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 A0A0G2JRQ6 117 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 SH2D7A6NKC9 451 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-208ENST00000497026 OOSP1A8MZH6 123 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 SPINK4O60575 86 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 CSN1S1P47710 185 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 ZNF816Q0VGE8 651 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-208ENST00000497026 LYRM7Q5U5X0 104 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 LINC01545Q5VT33 79 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 TRAT1Q6PIZ9 186 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 FAM231DQ6ZW35 169 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 SPATA12Q7Z6I5 190 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 DRAM1Q8N682 238 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 SLC25A33Q9BSK2 321 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 IFI27L2Q9H2X8 130 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 PLEKHA3Q9HB20 300 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 SPANXB1Q9NS25 103 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-208ENST00000497026 OR1A1Q9P1Q5 309 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 RABAC1Q9UI14 185 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 AMMECR1Q9Y4X0 333 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-208ENST00000497026 YTHDF2Q9Y5A9 579 aaKnown RBP3.79□□□□□ -1.8
CSMD3-208ENST00000497026 WNK1Q9H4A3 2382 aa3.79□□□□□ -1.8
CSMD3-208ENST00000497026 IGHV3-72A0A0B4J1Y9 119 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IGKV1D-13A0A0B4J2D9 117 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IGKV1-6A0A0C4DH72 117 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 SPINT2O43291 252 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 CNIH1O95406 144 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IGKV1-5P01602 117 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 SPINK8P0C7L1 97 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 CT45A10P0DMU9 189 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IGKV1-13P0DP09 117 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 MFAP2P55001 183 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 HERV-K104P63124 156 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 HBBP68871 147 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 EBI3Q14213 229 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 FXYD3Q14802 87 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 TMEM30BQ3MIR4 351 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 C10orf99Q6UWK7 81 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 PQLC2Q6ZP29 291 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 ZNF329Q86UD4 541 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 Q8N6K4 173 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 C5orf56Q8N8D9 126 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 NHLRC2Q8NBF2 726 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 NEXN-AS1Q8NBZ9 246 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 OR10X1Q8NGY0 326 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 RAB37Q96AX2 223 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 VGLL1Q99990 258 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 KRTAP4-4Q9BYR3 166 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 GNG12Q9UBI6 72 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 FBN3Q75N90 2809 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 A0A1W2PRE2 83 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 APOMO95445 188 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IGKV3-20P01619 116 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 SCTP09683 121 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 FAM106CPP0CH98 169 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 SAA2P0DJI9 122 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 CD28P10747 220 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 ATP5IP56385 69 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 ZFAND6Q6FIF0 208 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 ZNF833PQ6ZTB9 187 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 Q8N9W7 124 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 IL1F10Q8WWZ1 152 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 HINT2Q9BX68 163 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 C1QTNF4Q9BXJ3 329 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 MRPL20Q9BYC9 149 aaKnown RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 RNASE7Q9H1E1 156 aaKnown RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 RAB9BQ9NP90 201 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 TECRQ9NZ01 308 aaKnown RBP3.78□□□□□ -1.8
CSMD3-208ENST00000497026 MOB4Q9Y3A3 225 aa3.78□□□□□ -1.8
CSMD3-208ENST00000497026 CMYA5Q8N3K9 4069 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 PLXNB1O43157 2135 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 PMS2P5A8MQ11 134 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 TMEM262E9PQX1 116 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 CHEK1O14757 476 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 FCGR2BP31994 310 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-208ENST00000497026 G6PCP35575 357 aa3.77□□□□□ -1.81
CSMD3-208ENST00000497026 VDAC2P45880 294 aaPredicted RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms