RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 IGHV4-28A0A0C4DH34 117 aa12.41□□□□□ -0.42
LIME1-208ENST00000493265 K7EN84 100 aa12.41□□□□□ -0.42
LIME1-208ENST00000493265 COX8CQ7Z4L0 72 aa12.41□□□□□ -0.42
LIME1-208ENST00000493265 EIF4E3Q8N5X7 224 aaKnown RBP12.41□□□□□ -0.42
LIME1-208ENST00000493265 DAZAP1Q96EP5 407 aaKnown RBP12.41□□□□□ -0.42
LIME1-208ENST00000493265 DNAH7Q8WXX0 4024 aa12.4□□□□□ -0.42
LIME1-208ENST00000493265 ADIRFQ15847 76 aa12.4□□□□□ -0.42
LIME1-208ENST00000493265 SMIM12Q96EX1 92 aa12.4□□□□□ -0.42
LIME1-208ENST00000493265 NAT8Q9UHE5 227 aa12.4□□□□□ -0.42
LIME1-208ENST00000493265 TMEM218A2RU14 115 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 SMIM9A6NGZ8 99 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 GNRH2O43555 120 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 MIFP14174 115 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 LINC01551Q86U37 167 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 SLC7A5P1Q8MH63 180 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 NEU1Q99519 415 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 SDF2L1Q9HCN8 221 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 BIN3Q9NQY0 253 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 SACSQ9NZJ4 4579 aa12.39□□□□□ -0.43
LIME1-208ENST00000493265 B4DEV8 164 aa12.38□□□□□ -0.43
LIME1-208ENST00000493265 F8W036 122 aa12.38□□□□□ -0.43
LIME1-208ENST00000493265 RPL19P84098 196 aaKnown RBP12.38□□□□□ -0.43
LIME1-208ENST00000493265 Q8NAQ8 132 aa12.38□□□□□ -0.43
LIME1-208ENST00000493265 RNASE7Q9H1E1 156 aaKnown RBP12.38□□□□□ -0.43
LIME1-208ENST00000493265 TIMM8BQ9Y5J9 83 aaPredicted RBP12.38□□□□□ -0.43
LIME1-208ENST00000493265 LY96Q9Y6Y9 160 aa12.38□□□□□ -0.43
LIME1-208ENST00000493265 EPPK1P58107 5090 aaKnown RBP12.37□□□□□ -0.43
LIME1-208ENST00000493265 IGKV3D-20A0A0C4DH25 116 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 A0A0J9YWU9 116 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 GRIFINA4D1Z8 144 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 TYMSP04818 313 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 RPL23P62829 140 aaKnown RBP12.37□□□□□ -0.43
LIME1-208ENST00000493265 C16orf74Q96GX8 76 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 KCNS1Q96KK3 526 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 LINC00467Q9BRT7 94 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 GSN-AS1Q9NRJ2 163 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 TENM2Q9NT68 2774 aa12.37□□□□□ -0.43
LIME1-208ENST00000493265 TRGV11A0A075B6L2 103 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 TMEM189A5PLL7 270 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 KRBOX1C9JBD0 128 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 P01737 135 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 ADCYAP1P18509 176 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 CASC10Q5T4H9 136 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 NUDT10Q8NFP7 164 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 MUC7Q8TAX7 377 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 TMEM263Q8WUH6 116 aaKnown RBP12.36□□□□□ -0.43
LIME1-208ENST00000493265 NUDT11Q96G61 164 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 MDFICQ9P1T7 246 aa12.36□□□□□ -0.43
LIME1-208ENST00000493265 C19orf71A6NCJ1 209 aa12.35□□□□□ -0.43
LIME1-208ENST00000493265 ERVFC1-1P60608 527 aa12.35□□□□□ -0.43
LIME1-208ENST00000493265 TDRG1Q3Y452 100 aa12.35□□□□□ -0.43
LIME1-208ENST00000493265 LINC01559Q495D7 138 aa12.35□□□□□ -0.43
LIME1-208ENST00000493265 OR2D3Q8NGH3 330 aa12.35□□□□□ -0.43
LIME1-208ENST00000493265 RNASE8Q8TDE3 154 aaKnown RBP12.35□□□□□ -0.43
LIME1-208ENST00000493265 SNURFLB1AK76 121 aa12.34□□□□□ -0.43
LIME1-208ENST00000493265 GZMBP10144 247 aa12.34□□□□□ -0.43
LIME1-208ENST00000493265 S100A4P26447 101 aaKnown RBP12.34□□□□□ -0.43
LIME1-208ENST00000493265 ZNF415Q09FC8 603 aa12.34□□□□□ -0.43
LIME1-208ENST00000493265 IBA57Q5T440 356 aaKnown RBP12.34□□□□□ -0.43
LIME1-208ENST00000493265 ZNF493Q6ZR52 646 aa12.34□□□□□ -0.43
LIME1-208ENST00000493265 ISOC2Q96AB3 205 aa12.34□□□□□ -0.43
LIME1-208ENST00000493265 IGHV3-16A0A0C4DH30 117 aa12.33□□□□□ -0.44
LIME1-208ENST00000493265 GATCO43716 136 aaKnown RBP12.33□□□□□ -0.44
LIME1-208ENST00000493265 ASIPP42127 132 aa12.33□□□□□ -0.44
LIME1-208ENST00000493265 RPP21Q9H633 154 aaKnown RBP12.33□□□□□ -0.44
LIME1-208ENST00000493265 NOP10Q9NPE3 64 aaKnown RBP12.33□□□□□ -0.44
LIME1-208ENST00000493265 BIRC6Q9NR09 4857 aa12.33□□□□□ -0.44
LIME1-208ENST00000493265 PLAC8L1A1L4L8 177 aa12.32□□□□□ -0.44
LIME1-208ENST00000493265 H3BVH4 76 aa12.32□□□□□ -0.44
LIME1-208ENST00000493265 C11orf72Q8NBR9 251 aa12.32□□□□□ -0.44
LIME1-208ENST00000493265 SEC11CQ9BY50 192 aa12.32□□□□□ -0.44
LIME1-208ENST00000493265 NDUFA5Q16718 116 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 FAM222AQ5U5X8 452 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 C15orf54Q8N8G6 183 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 SFRP2Q96HF1 295 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 TPPP3Q9BW30 176 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 C11orf68Q9H3H3 251 aaKnown RBP12.31□□□□□ -0.44
LIME1-208ENST00000493265 CELA1Q9UNI1 258 aa12.31□□□□□ -0.44
LIME1-208ENST00000493265 TCL1AP56279 114 aa12.3□□□□□ -0.44
LIME1-208ENST00000493265 FAM231DQ6ZW35 169 aa12.3□□□□□ -0.44
LIME1-208ENST00000493265 OR10G8Q8NGN5 311 aa12.3□□□□□ -0.44
LIME1-208ENST00000493265 OSTCQ9NRP0 149 aa12.3□□□□□ -0.44
LIME1-208ENST00000493265 ARMS2P0C7Q2 107 aa12.29□□□□□ -0.44
LIME1-208ENST00000493265 RNASE3P12724 160 aaKnown RBP12.29□□□□□ -0.44
LIME1-208ENST00000493265 RPS20P60866 119 aaKnown RBP12.29□□□□□ -0.44
LIME1-208ENST00000493265 SSTP61278 116 aa12.29□□□□□ -0.44
LIME1-208ENST00000493265 ZNF575Q86XF7 245 aa12.29□□□□□ -0.44
LIME1-208ENST00000493265 LYSTQ99698 3801 aa12.29□□□□□ -0.44
LIME1-208ENST00000493265 MRPL16Q9NX20 251 aaKnown RBP12.29□□□□□ -0.44
LIME1-208ENST00000493265 TRGV1A0A0A0MS02 117 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 MUC21A0A0G2JKD1 596 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 MUC21A0A140T8X8 626 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 XKRY2A2RUG3 117 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 CXorf65A6NEN9 183 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 SPART-AS1P0CW21 52 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 DEFB130BP0DP73 79 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 DEFB130AP0DP74 79 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 PNRC1Q12796 327 aaPredicted RBP12.28□□□□□ -0.44
LIME1-208ENST00000493265 DKK2Q9UBU2 259 aa12.28□□□□□ -0.44
LIME1-208ENST00000493265 DNAH1Q9P2D7 4330 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms