RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PRKDCP78527 4128 aaKnown RBP7.43□□□□□ -1.22
SKA1-204ENST00000488454 IGHV4-28A0A0C4DH34 117 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 EMP1P54849 157 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 MUC21Q5SSG8 566 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 FAM162BQ5T6X4 162 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 ZNF493Q6ZR52 646 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 COX8CQ7Z4L0 72 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 DAZAP1Q96EP5 407 aaKnown RBP7.43□□□□□ -1.22
SKA1-204ENST00000488454 SMIM12Q96EX1 92 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 C16orf74Q96GX8 76 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 ZC2HC1AQ96GY0 325 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 KCNS1Q96KK3 526 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 LINC00467Q9BRT7 94 aa7.43□□□□□ -1.22
SKA1-204ENST00000488454 A0A0J9YWU9 116 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 ZNF727A8MUV8 499 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 DEFB4AO15263 64 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 ORM1P02763 201 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 PRM2P04554 102 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 AZU1P20160 251 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 ZNF80P51504 273 aaPredicted RBP7.42□□□□□ -1.22
SKA1-204ENST00000488454 SRSF3P84103 164 aaKnown RBP7.42□□□□□ -1.22
SKA1-204ENST00000488454 ANXA2RQ3ZCQ2 193 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 FAM74A3Q4VXF1 159 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 PRR27Q6MZM9 219 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 Q6ZQT7 251 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 Q8NAQ8 132 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 TMEM263Q8WUH6 116 aaKnown RBP7.42□□□□□ -1.22
SKA1-204ENST00000488454 SMIM7Q9BQ49 75 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 MLST8Q9BVC4 326 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 C11orf68Q9H3H3 251 aaKnown RBP7.42□□□□□ -1.22
SKA1-204ENST00000488454 SDF2L1Q9HCN8 221 aa7.42□□□□□ -1.22
SKA1-204ENST00000488454 HUWE1Q7Z6Z7 4374 aaKnown RBP7.41□□□□□ -1.22
SKA1-204ENST00000488454 TRGV11A0A075B6L2 103 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 SNURFLB1AK76 121 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 C9JCJ5 164 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 CRIP1P50238 77 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 SOHLH1Q5JUK2 328 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 TIMM8BQ9Y5J9 83 aaPredicted RBP7.41□□□□□ -1.22
SKA1-204ENST00000488454 NBEAL2Q6ZNJ1 2754 aa7.41□□□□□ -1.22
SKA1-204ENST00000488454 TEX48A0A1B0GUV7 120 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 CXorf65A6NEN9 183 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 B4DEV8 164 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 C9JQL5 133 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 SH2D1AO60880 128 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 SPART-AS1P0CW21 52 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 S100A4P26447 101 aaKnown RBP7.4□□□□□ -1.22
SKA1-204ENST00000488454 ZNF415Q09FC8 603 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 OR5I1Q13606 314 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 TMEM241Q24JQ0 296 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 TDRG1Q3Y452 100 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 UQCC3Q6UW78 93 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 IL17DQ8TAD2 202 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 OCC1Q8TAD7 63 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 TP53TG3Q9ULZ0 132 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 LY96Q9Y6Y9 160 aa7.4□□□□□ -1.22
SKA1-204ENST00000488454 TRBV20OR9-2A0A075B6H5 130 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 PGPEP1LA6NFU8 196 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 M0R036 132 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 GNRH2O43555 120 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 IBA57Q5T440 356 aaKnown RBP7.39□□□□□ -1.23
SKA1-204ENST00000488454 COMMD7Q86VX2 200 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 C11orf45Q8TAV5 145 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 RNASE8Q8TDE3 154 aaKnown RBP7.39□□□□□ -1.23
SKA1-204ENST00000488454 NOP10Q9NPE3 64 aaKnown RBP7.39□□□□□ -1.23
SKA1-204ENST00000488454 GSN-AS1Q9NRJ2 163 aa7.39□□□□□ -1.23
SKA1-204ENST00000488454 TMSB15BA0A087X1C1 80 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 LINC00862A6NCI5 91 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 LYRM9A8MSI8 78 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 KRBOX1C9JBD0 128 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 IGLV2-8P01709 118 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 P01737 135 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 TYMSP04818 313 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 ASIPP42127 132 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 FAM222AQ5U5X8 452 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 EDA2RQ9HAV5 297 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 C11orf21Q9P2W6 132 aa7.38□□□□□ -1.23
SKA1-204ENST00000488454 IGKV3D-20A0A0C4DH25 116 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 IGHV3-16A0A0C4DH30 117 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 XKRY2A2RUG3 117 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 SFTA3P0C7M3 94 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 TCL1AP56279 114 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 LINC00310P59036 64 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 RPS20P60866 119 aaKnown RBP7.37□□□□□ -1.23
SKA1-204ENST00000488454 DAZ2Q13117 558 aaKnown RBP7.37□□□□□ -1.23
SKA1-204ENST00000488454 WWC2-AS2Q96NR7 200 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 SPXQ9BT56 116 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 MDFICQ9P1T7 246 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 DKK2Q9UBU2 259 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 NAT8Q9UHE5 227 aa7.37□□□□□ -1.23
SKA1-204ENST00000488454 PLAC8L1A1L4L8 177 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 GRIFINA4D1Z8 144 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 K7EN84 100 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 DEFB130BP0DP73 79 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 DEFB130AP0DP74 79 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 ERVFC1-1P60608 527 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 DAD1P61803 113 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 LINC01551Q86U37 167 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 C11orf72Q8NBR9 251 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 NUDT10Q8NFP7 164 aa7.36□□□□□ -1.23
SKA1-204ENST00000488454 OR2D3Q8NGH3 330 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms