RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 KHDC1LQ5JSQ8 128 aa9.68□□□□□ -0.86
SHROOM3-208ENST00000486758 SHANK2-AS3Q9BTD1 123 aa9.68□□□□□ -0.86
SHROOM3-208ENST00000486758 C7orf69Q9H7B7 122 aa9.68□□□□□ -0.86
SHROOM3-208ENST00000486758 IGKV1-17P01599 117 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 IGKV3-20P01619 116 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 SRD5A1P18405 259 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 VMO1Q7Z5L0 202 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 SYT8Q8NBV8 401 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 FABP5P3A8MUU1 101 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 KLRB1Q12918 225 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 TEP1Q99973 2627 aaKnown RBP9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 CRIP1P50238 77 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 CR1LQ2VPA4 569 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 CCDC144NLQ6NUI1 221 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 ATP6V0BQ99437 205 aa9.67□□□□□ -0.86
SHROOM3-208ENST00000486758 G3V318 75 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 IGLV2-23P01705 113 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 SPINK8P0C7L1 97 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 CFAP46Q8IYW2 2715 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 IGHV3-64A0A075B6Q5 118 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 ZNF815PA8K554 130 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 PF4V1P10720 104 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 C15orf32Q32M92 178 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 TMEM170BQ5T4T1 132 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 SIGLEC15Q6ZMC9 328 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 RAI1Q7Z5J4 1906 aaPredicted RBP9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 HOXA3O43365 443 aaPredicted RBP9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 INSL3P51460 131 aa9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 NXT2Q9NPJ8 142 aaKnown RBP9.66□□□□□ -0.86
SHROOM3-208ENST00000486758 ATP5LO75964 103 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 PRTN3P24158 256 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 GEMIN7Q9H840 131 aaKnown RBP9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 C5orf64Q2M2E5 130 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 CEND1Q8N111 149 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 ZNF491Q8N8L2 437 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 PTH2Q96A98 100 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 PRR25Q96S07 402 aa9.65□□□□□ -0.86
SHROOM3-208ENST00000486758 LINC01549A6NIU2 74 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 MYCNOSP40205 109 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 DLX6P56179 175 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 NEGR1Q7Z3B1 354 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 C16orf92Q96LL3 132 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 C20orf78Q9BR46 151 aa9.65□□□□□ -0.87
SHROOM3-208ENST00000486758 FCN3O75636 299 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 C12orf74Q32Q52 190 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 PRORYQ9H606 182 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 FAM74A4Q5TZK3 123 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 IL17RELQ6ZVW7 336 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 IGLL5B9A064 214 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 FGF6P10767 208 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 CITED1Q99966 193 aa9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 HRNRQ86YZ3 2850 aaPredicted RBP9.64□□□□□ -0.87
SHROOM3-208ENST00000486758 CDSNQ15517 529 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 PVRIGQ6DKI7 326 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 BPESC1Q9GZL8 116 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 PHLDA3Q9Y5J5 127 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 ZNF80P51504 273 aaPredicted RBP9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 UFSP1Q6NVU6 142 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 DTX2Q86UW9 622 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 SPAG8Q99932 426 aaPredicted RBP9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 HLA-DRB4P13762 266 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 HLA-DRB4X5D2U9 266 aa9.63□□□□□ -0.87
SHROOM3-208ENST00000486758 IGLV2-11P01706 119 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 TRGV3P03979 118 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 PRSS2P07478 247 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 LAGE3Q14657 143 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 RAX2Q96IS3 184 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 ITPR3Q14573 2671 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 CELSR2Q9HCU4 2923 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 HIVEP2P31629 2446 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 A0A096LNJ9 63 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 GNLYP22749 145 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 ZNF562Q6V9R5 426 aa9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 C14orf178Q8N769 122 aaPredicted RBP9.62□□□□□ -0.87
SHROOM3-208ENST00000486758 H3BRN7 92 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 ANAPC13Q9BS18 74 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 F8P00451 2351 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 TRAV8-2A0A0B4J237 113 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 MAPKAPK5-AS1Q8N8E1 139 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 IGSF10Q6WRI0 2623 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 SAA4P35542 130 aa9.61□□□□□ -0.87
SHROOM3-208ENST00000486758 PRAC2D3DTV9 90 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 FOXI2Q6ZQN5 318 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 DYNAPQ8N1N2 210 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 KLHL30-AS1Q8NEE0 82 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 F8W1H4 67 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 K7EIM0 57 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 IGLV1-47P01700 117 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 LINC00311Q8N616 119 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 MAPK1IP1LQ8NDC0 245 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 METTL26Q96S19 204 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 TEX22C9J3V5 150 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 SLC25A16P16260 332 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 SRSF1Q07955 248 aaKnown RBP eCLIP9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 HIST2H2BCQ6DN03 193 aa9.6□□□□□ -0.87
SHROOM3-208ENST00000486758 I3L2K1 104 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 DEFB1P60022 68 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 SIVA1O15304 175 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 ATP6V0E1O15342 81 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms