RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 IGHV4-4A0A075B6R2 117 aa11.88□□□□□ -0.51
TRIM54-203ENST00000485306 C7orf71A4D174 169 aa11.88□□□□□ -0.51
TRIM54-203ENST00000485306 CRXO43186 299 aaPredicted RBP11.88□□□□□ -0.51
TRIM54-203ENST00000485306 RRN3P1Q2M238 152 aa11.88□□□□□ -0.51
TRIM54-203ENST00000485306 SFTA3P0C7M3 94 aa11.87□□□□□ -0.51
TRIM54-203ENST00000485306 GFI1BQ5VTD9 330 aa11.87□□□□□ -0.51
TRIM54-203ENST00000485306 Q6AWC8 147 aa11.87□□□□□ -0.51
TRIM54-203ENST00000485306 TMEM256Q8N2U0 113 aa11.87□□□□□ -0.51
TRIM54-203ENST00000485306 NIPSNAP3BQ9BS92 247 aa11.87□□□□□ -0.51
TRIM54-203ENST00000485306 TRAV21A0A0B4J279 112 aa11.86□□□□□ -0.51
TRIM54-203ENST00000485306 TMEM218A2RU14 115 aa11.86□□□□□ -0.51
TRIM54-203ENST00000485306 RNASE4P34096 147 aaKnown RBP11.86□□□□□ -0.51
TRIM54-203ENST00000485306 C8orf49Q96NF6 230 aa11.86□□□□□ -0.51
TRIM54-203ENST00000485306 TRBV20OR9-2A0A075B6H5 130 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 TRAV12-2A0A075B6T6 113 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 H7BYZ3 331 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 GCGP01275 180 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 PFN1P07737 140 aaKnown RBP11.85□□□□□ -0.51
TRIM54-203ENST00000485306 BTN1A1Q13410 526 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 TMEM241Q24JQ0 296 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 FAM222AQ5U5X8 452 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 NDUFAF3Q9BU61 184 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 DKK2Q9UBU2 259 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 NAT8Q9UHE5 227 aa11.85□□□□□ -0.51
TRIM54-203ENST00000485306 EPPK1P58107 5090 aaKnown RBP11.84□□□□□ -0.51
TRIM54-203ENST00000485306 FABP5P3A8MUU1 101 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 J3KRW8 73 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 ZNF324O75467 553 aaPredicted RBP11.84□□□□□ -0.51
TRIM54-203ENST00000485306 IGLV2-8P01709 118 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 KIR3DS1Q14943 382 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 FAM162BQ5T6X4 162 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 PRR9Q5T870 116 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 ZC2HC1AQ96GY0 325 aa11.84□□□□□ -0.51
TRIM54-203ENST00000485306 TRAV12-3A0A0B4J271 114 aa11.83□□□□□ -0.52
TRIM54-203ENST00000485306 OCC1Q8TAD7 63 aa11.83□□□□□ -0.52
TRIM54-203ENST00000485306 FAM210BQ96KR6 192 aa11.83□□□□□ -0.52
TRIM54-203ENST00000485306 PYGO2Q9BRQ0 406 aa11.83□□□□□ -0.52
TRIM54-203ENST00000485306 LINC00467Q9BRT7 94 aa11.83□□□□□ -0.52
TRIM54-203ENST00000485306 MGST1P10620 155 aaKnown RBP11.82□□□□□ -0.52
TRIM54-203ENST00000485306 LINC01551Q86U37 167 aa11.82□□□□□ -0.52
TRIM54-203ENST00000485306 NHLRC2Q8NBF2 726 aa11.82□□□□□ -0.52
TRIM54-203ENST00000485306 LINC01587Q99440 93 aa11.82□□□□□ -0.52
TRIM54-203ENST00000485306 SEC11CQ9BY50 192 aa11.82□□□□□ -0.52
TRIM54-203ENST00000485306 KMT2AQ03164 3969 aa11.82□□□□□ -0.52
TRIM54-203ENST00000485306 P0DMU3 169 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 FAM231AP0DMU4 169 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 FAM231CP0DMU5 169 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 CRIP1P50238 77 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 ZNF80P51504 273 aaPredicted RBP11.81□□□□□ -0.52
TRIM54-203ENST00000485306 DAD1P61803 113 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 PNRC1Q12796 327 aaPredicted RBP11.81□□□□□ -0.52
TRIM54-203ENST00000485306 KCNS1Q96KK3 526 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 SDF2L1Q9HCN8 221 aa11.81□□□□□ -0.52
TRIM54-203ENST00000485306 IGHV1OR15-1A0A075B7D0 117 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 PGPEP1LA6NFU8 196 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 ZNF705GA8MUZ8 300 aaPredicted RBP11.8□□□□□ -0.52
TRIM54-203ENST00000485306 F8W036 122 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 SH2D1AO60880 128 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 TDRG1Q3Y452 100 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 FAM159AQ6UWV7 190 aa11.8□□□□□ -0.52
TRIM54-203ENST00000485306 DAZAP1Q96EP5 407 aaKnown RBP11.8□□□□□ -0.52
TRIM54-203ENST00000485306 KRBOX1C9JBD0 128 aa11.79□□□□□ -0.52
TRIM54-203ENST00000485306 PRM2P04554 102 aa11.79□□□□□ -0.52
TRIM54-203ENST00000485306 RPL23P62829 140 aaKnown RBP11.79□□□□□ -0.52
TRIM54-203ENST00000485306 ANXA2RQ3ZCQ2 193 aa11.79□□□□□ -0.52
TRIM54-203ENST00000485306 PRR27Q6MZM9 219 aa11.79□□□□□ -0.52
TRIM54-203ENST00000485306 FAM231DQ6ZW35 169 aa11.79□□□□□ -0.52
TRIM54-203ENST00000485306 C19orf71A6NCJ1 209 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 LYRM9A8MSI8 78 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 K7EN84 100 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 HTN3P15516 51 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 LINC01559Q495D7 138 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 C10orf91Q5T1B1 145 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 ZNF493Q6ZR52 646 aa11.78□□□□□ -0.52
TRIM54-203ENST00000485306 CARHSP1Q9Y2V2 147 aaKnown RBP11.78□□□□□ -0.52
TRIM54-203ENST00000485306 TRGV11A0A075B6L2 103 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 P01737 135 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 HTN1P15515 57 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 ADCYAP1P18509 176 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 OR5I1Q13606 314 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 ADIRFQ15847 76 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 POM121L12Q8N7R1 296 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 ISOC2Q96AB3 205 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 OSTCQ9NRP0 149 aa11.77□□□□□ -0.53
TRIM54-203ENST00000485306 ORM1P02763 201 aa11.76□□□□□ -0.53
TRIM54-203ENST00000485306 CXCL1P09341 107 aa11.76□□□□□ -0.53
TRIM54-203ENST00000485306 AZU1P20160 251 aa11.76□□□□□ -0.53
TRIM54-203ENST00000485306 RPS20P60866 119 aaKnown RBP11.76□□□□□ -0.53
TRIM54-203ENST00000485306 SLC7A5P1Q8MH63 180 aa11.76□□□□□ -0.53
TRIM54-203ENST00000485306 NAGKQ9UJ70 344 aa11.76□□□□□ -0.53
TRIM54-203ENST00000485306 XKRY2A2RUG3 117 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 CBY3A6NI87 242 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 ERVFC1-1P60608 527 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 MUC21Q5SSG8 566 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 IBA57Q5T440 356 aaKnown RBP11.75□□□□□ -0.53
TRIM54-203ENST00000485306 Q6ZQT7 251 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 C15orf54Q8N8G6 183 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 NUDT10Q8NFP7 164 aa11.75□□□□□ -0.53
TRIM54-203ENST00000485306 TMEM263Q8WUH6 116 aaKnown RBP11.75□□□□□ -0.53
TRIM54-203ENST00000485306 NUDT11Q96G61 164 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms