RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 FMC1Q96HJ9 113 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 LINC00479Q96M42 142 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 TRAV34A0A0B4J273 112 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 PFN1P07737 140 aaKnown RBP11.21□□□□□ -0.61
UPF3A-208ENST00000484246 ZNF80P51504 273 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-208ENST00000484246 MUC21Q5SSG8 566 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 C8orf49Q96NF6 230 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 TXNDC17Q9BRA2 123 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 NDUFAF3Q9BU61 184 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 ZFP30Q9Y2G7 519 aa11.21□□□□□ -0.61
UPF3A-208ENST00000484246 GCGP01275 180 aa11.2□□□□□ -0.62
UPF3A-208ENST00000484246 TMEM183BQ1AE95 376 aa11.2□□□□□ -0.62
UPF3A-208ENST00000484246 LCE2CQ5TA81 110 aa11.2□□□□□ -0.62
UPF3A-208ENST00000484246 Q6ZTI0 123 aa11.2□□□□□ -0.62
UPF3A-208ENST00000484246 KCNS1Q96KK3 526 aa11.2□□□□□ -0.62
UPF3A-208ENST00000484246 A0A1B0GV50 99 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 LTAP01374 205 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 S100A9P06702 114 aaKnown RBP11.19□□□□□ -0.62
UPF3A-208ENST00000484246 AKR1C3P42330 323 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 CCL20P78556 96 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 LCE2AQ5TA79 106 aaPredicted RBP11.19□□□□□ -0.62
UPF3A-208ENST00000484246 C11orf52Q96A22 123 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 SPXQ9BT56 116 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 SDF2L1Q9HCN8 221 aa11.19□□□□□ -0.62
UPF3A-208ENST00000484246 IGHV3-16A0A0C4DH30 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GAGE12BA1L429 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GAGE7O76087 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 TYMSP04818 313 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GAGE12FP0CL80 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GAGE12GP0CL81 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GAGE12IP0CL82 117 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 HTN3P15516 51 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 NKX2-5P52952 324 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-208ENST00000484246 TMEM88Q6PEY1 159 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 TMEM183AQ8IXX5 376 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 C15orf53Q8NAA6 179 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 MDFICQ9P1T7 246 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 GNG13Q9P2W3 67 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 C11orf21Q9P2W6 132 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 NAGKQ9UJ70 344 aa11.18□□□□□ -0.62
UPF3A-208ENST00000484246 TRGV1A0A0A0MS02 117 aa11.17□□□□□ -0.62
UPF3A-208ENST00000484246 SCO2A0A1W2PP80 73 aa11.17□□□□□ -0.62
UPF3A-208ENST00000484246 TAGLN2P37802 199 aaKnown RBP11.17□□□□□ -0.62
UPF3A-208ENST00000484246 UBE2G1P62253 170 aa11.17□□□□□ -0.62
UPF3A-208ENST00000484246 F5H768 121 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 LY6G6CO95867 125 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 IFNA1P01562 189 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 ALKAL2Q6UX46 152 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 LYPD6BQ8NI32 183 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 RASL10AQ92737 203 aa11.16□□□□□ -0.62
UPF3A-208ENST00000484246 FABP5P3A8MUU1 101 aa11.15□□□□□ -0.62
UPF3A-208ENST00000484246 H3BNG1 76 aa11.15□□□□□ -0.62
UPF3A-208ENST00000484246 BCL2P10415 239 aa11.15□□□□□ -0.62
UPF3A-208ENST00000484246 ZC2HC1AQ96GY0 325 aa11.15□□□□□ -0.62
UPF3A-208ENST00000484246 MLST8Q9BVC4 326 aa11.15□□□□□ -0.62
UPF3A-208ENST00000484246 TRGV2A0A075B6R0 118 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 A6NJY4 79 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 M0R2P5 195 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 GNRH2O43555 120 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 P0DMU3 169 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 FAM231AP0DMU4 169 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 FAM231CP0DMU5 169 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 HOXA5P20719 270 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 CRIP1P50238 77 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 BLOC1S1P78537 153 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 MEF2BQ02080 365 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-208ENST00000484246 ZNF674Q2M3X9 581 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 PTH2Q96A98 100 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 C9orf85Q96MD7 179 aa11.14□□□□□ -0.63
UPF3A-208ENST00000484246 MRPL16Q9NX20 251 aaKnown RBP11.14□□□□□ -0.63
UPF3A-208ENST00000484246 VPS13DQ5THJ4 4388 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 IGKV3D-20A0A0C4DH25 116 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 PDE6DO43924 150 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 DNLZQ5SXM8 178 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 FAM162BQ5T6X4 162 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 VAX2Q9UIW0 290 aa11.13□□□□□ -0.63
UPF3A-208ENST00000484246 SH2D1AO60880 128 aa11.12□□□□□ -0.63
UPF3A-208ENST00000484246 SMIM12Q96EX1 92 aa11.12□□□□□ -0.63
UPF3A-208ENST00000484246 RNASE3P12724 160 aaKnown RBP11.11□□□□□ -0.63
UPF3A-208ENST00000484246 RPL35P42766 123 aaKnown RBP11.11□□□□□ -0.63
UPF3A-208ENST00000484246 PIK3CD-AS1Q5SR53 167 aa11.11□□□□□ -0.63
UPF3A-208ENST00000484246 BAGE2Q86Y30 109 aa11.11□□□□□ -0.63
UPF3A-208ENST00000484246 KRTAP17-1Q9BYP8 105 aa11.11□□□□□ -0.63
UPF3A-208ENST00000484246 TRAV26-1A0A087WT03 109 aa11.1□□□□□ -0.63
UPF3A-208ENST00000484246 KRBOX1C9JBD0 128 aa11.1□□□□□ -0.63
UPF3A-208ENST00000484246 SLAQ13239 276 aa11.1□□□□□ -0.63
UPF3A-208ENST00000484246 RNF212Q495C1 297 aa11.1□□□□□ -0.63
UPF3A-208ENST00000484246 TRAV4A0A0B4J268 109 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 NDUFS6O75380 124 aaKnown RBP11.09□□□□□ -0.63
UPF3A-208ENST00000484246 CXCL1P09341 107 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 FAM3BP58499 235 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-208ENST00000484246 OR5I1Q13606 314 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 POM121L12Q8N7R1 296 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 DERL1Q9BUN8 251 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 IL36BQ9NZH7 164 aa11.09□□□□□ -0.63
UPF3A-208ENST00000484246 B4DEV8 164 aa11.08□□□□□ -0.64
UPF3A-208ENST00000484246 ASIPP42127 132 aa11.08□□□□□ -0.64
UPF3A-208ENST00000484246 FHL2Q14192 279 aa11.08□□□□□ -0.64
UPF3A-208ENST00000484246 CENPWQ5EE01 88 aa11.08□□□□□ -0.64
UPF3A-208ENST00000484246 ZNF575Q86XF7 245 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms