RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 GATA1P15976 413 aaPredicted RBP13.82□□□□□ -0.2
CCM2-209ENST00000477605 SPANXN1Q5VSR9 72 aa13.82□□□□□ -0.2
CCM2-209ENST00000477605 TRGV3P03979 118 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 FOXC2Q99958 501 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 ABCA4P78363 2273 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 IGHV3OR16-13A0A075B7E8 117 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 IGHV3-74A0A0B4J1X5 117 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 OVOL1O14753 267 aa13.81□□□□□ -0.2
CCM2-209ENST00000477605 A0A0G2JLM5 398 aa13.8□□□□□ -0.2
CCM2-209ENST00000477605 K7EP34 96 aa13.8□□□□□ -0.2
CCM2-209ENST00000477605 K7ERU9 68 aa13.8□□□□□ -0.2
CCM2-209ENST00000477605 NDUFA4O00483 81 aa13.8□□□□□ -0.2
CCM2-209ENST00000477605 ZNF207O43670 478 aaKnown RBP13.8□□□□□ -0.2
CCM2-209ENST00000477605 H3BUA1 57 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 K7EMI3 77 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 ARL3P36405 182 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 IGHV3-49A0A0A0MS15 119 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 MED14OSP0DP75 135 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 DOPEY1Q5JWR5 2465 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 UFC1Q9Y3C8 167 aa13.79□□□□□ -0.2
CCM2-209ENST00000477605 H3BUT2 72 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 IGF1P05019 195 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 OR5A1Q8NGJ0 315 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 USMG5Q96IX5 58 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 MEGF9Q9H1U4 602 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 A0A087WX48 190 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 TRAV21A0A0B4J279 112 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 IGHV1-69DA0A0B4J2H0 117 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 TRBV7-9A0A0J9YWB2 115 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 IGHV1-69P01742 117 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 SMIM13P0DJ93 91 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 OR10J6PQ8NGY7 276 aa13.78□□□□□ -0.2
CCM2-209ENST00000477605 IGKV2D-26A0A0A0MRZ7 120 aa13.77□□□□□ -0.21
CCM2-209ENST00000477605 TCTAP57738 103 aa13.77□□□□□ -0.21
CCM2-209ENST00000477605 C20orf78Q9BR46 151 aa13.77□□□□□ -0.21
CCM2-209ENST00000477605 UTP20O75691 2785 aaKnown RBP13.77□□□□□ -0.21
CCM2-209ENST00000477605 NBPF19A0A087WUL8 3843 aa13.77□□□□□ -0.21
CCM2-209ENST00000477605 TRAV12-1A0A0B4J245 112 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 SLC25A16P16260 332 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 PLNP26678 52 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 ORMDL2Q53FV1 153 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 ZC2HC1BQ5TFG8 222 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 JMJD8Q96S16 334 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 CHAC1Q9BUX1 264 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 SMIM2Q9BVW6 85 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 A0A1W2PPM0 123 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 TAL2Q16559 108 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 RNF151Q2KHN1 245 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 C20orf173Q96LM9 149 aa13.76□□□□□ -0.21
CCM2-209ENST00000477605 CYSRT1A8MQ03 144 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 H3BVH4 76 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 SOCS3O14543 225 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 TMEM219Q86XT9 240 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 ZFAND2AQ8N6M9 145 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 TM2D2Q9BX73 214 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.75□□□□□ -0.21
CCM2-209ENST00000477605 GTSCR1Q86UQ5 136 aa13.75□□□□□ -0.21
CCM2-209ENST00000477605 MRPL35Q9NZE8 188 aaKnown RBP13.75□□□□□ -0.21
CCM2-209ENST00000477605 TRBV25-1A0A075B6N4 114 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 M0R381 172 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 PRR9Q5T870 116 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 APRG1Q8IVJ8 170 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 FAM19A4Q96LR4 140 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 DPH3P1Q9H4G8 78 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 TMEM160Q9NX00 188 aa13.74□□□□□ -0.21
CCM2-209ENST00000477605 TRAV26-2A0A0B4J265 109 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 TRAV40A0A0B4J280 105 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 PPP1R17O96001 155 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 FABP2P12104 132 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 ASIPP42127 132 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 GPHB5Q86YW7 130 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 H7C1H1 209 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 GCSHP23434 173 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 VPS25Q9BRG1 176 aa13.73□□□□□ -0.21
CCM2-209ENST00000477605 IGHG2P01859 326 aa13.72□□□□□ -0.21
CCM2-209ENST00000477605 IGHV4-39P01824 125 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 SUMO2P61956 95 aaKnown RBP13.71□□□□□ -0.21
CCM2-209ENST00000477605 CEND1Q8N111 149 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 RAB37Q96AX2 223 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 TOMM6Q96B49 74 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 SPCS1Q9Y6A9 102 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 S100A4P26447 101 aaKnown RBP13.71□□□□□ -0.21
CCM2-209ENST00000477605 SAMD5Q5TGI4 173 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 HIST2H2BCQ6DN03 193 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 UNQ9165/PRO28630Q6UXU0 137 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 Q6ZQT7 251 aa13.71□□□□□ -0.21
CCM2-209ENST00000477605 F8VRH5 84 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 LINC01619G3V211 115 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 FXYD2P54710 66 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 PIMREGQ9BSJ6 248 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 RASL10AQ92737 203 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 PHLDA3Q9Y5J5 127 aa13.7□□□□□ -0.22
CCM2-209ENST00000477605 SAMD13Q5VXD3 122 aa13.69□□□□□ -0.22
CCM2-209ENST00000477605 POM121L12Q8N7R1 296 aa13.69□□□□□ -0.22
CCM2-209ENST00000477605 LINC00527Q9UJ94 153 aa13.69□□□□□ -0.22
CCM2-209ENST00000477605 A6NDX4 124 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 LINC01549A6NIU2 74 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 NDUFS8O00217 210 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 NEGR1Q7Z3B1 354 aa13.68□□□□□ -0.22
CCM2-209ENST00000477605 SCGB3A1Q96QR1 104 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms