RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TREM1Q9NP99 234 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 C11orf21Q9P2W6 132 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 NAGKQ9UJ70 344 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 TRAV21A0A0B4J279 112 aa12.67□□□□□ -0.38
COL7A1-209ENST00000474432 IGLV2-11P01706 119 aa12.67□□□□□ -0.38
COL7A1-209ENST00000474432 ZNF80P51504 273 aaPredicted RBP12.67□□□□□ -0.38
COL7A1-209ENST00000474432 KRTAP10-2P60368 255 aa12.67□□□□□ -0.38
COL7A1-209ENST00000474432 MRPL23Q16540 153 aaKnown RBP12.67□□□□□ -0.38
COL7A1-209ENST00000474432 SPATA12Q7Z6I5 190 aa12.67□□□□□ -0.38
COL7A1-209ENST00000474432 TRGV4A0A0C4DH28 118 aa12.66□□□□□ -0.38
COL7A1-209ENST00000474432 GGTLC3B5MD39 225 aa12.66□□□□□ -0.38
COL7A1-209ENST00000474432 K7EQD1 137 aa12.66□□□□□ -0.38
COL7A1-209ENST00000474432 TCRAP04437 139 aa12.66□□□□□ -0.38
COL7A1-209ENST00000474432 GIPP09681 153 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-209ENST00000474432 SERF2P84101 59 aa12.66□□□□□ -0.38
COL7A1-209ENST00000474432 G3V3Q6 166 aa12.65□□□□□ -0.38
COL7A1-209ENST00000474432 RPL7L1Q6DKI1 246 aaKnown RBP12.65□□□□□ -0.38
COL7A1-209ENST00000474432 NEGR1Q7Z3B1 354 aa12.65□□□□□ -0.38
COL7A1-209ENST00000474432 C5orf17Q8NAS9 161 aa12.65□□□□□ -0.38
COL7A1-209ENST00000474432 TNFSF18Q9UNG2 199 aa12.65□□□□□ -0.38
COL7A1-209ENST00000474432 TNFRSF18Q9Y5U5 241 aa12.65□□□□□ -0.38
COL7A1-209ENST00000474432 TRAV4A0A0B4J268 109 aa12.64□□□□□ -0.39
COL7A1-209ENST00000474432 M0R2P5 195 aa12.64□□□□□ -0.39
COL7A1-209ENST00000474432 CDK2AP2O75956 126 aa12.64□□□□□ -0.39
COL7A1-209ENST00000474432 ZNF726P1Q15940 193 aa12.64□□□□□ -0.39
COL7A1-209ENST00000474432 SERTM2A0A1B0GWG4 89 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 MBP02144 154 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 GYPEP15421 78 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 SUMO1P63165 101 aaKnown RBP12.63□□□□□ -0.39
COL7A1-209ENST00000474432 ASB13Q8WXK3 278 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 EPDR1Q9UM22 224 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 PSG8Q9UQ74 426 aa12.63□□□□□ -0.39
COL7A1-209ENST00000474432 LOC100131303A0A0U1RQF7 123 aa12.62□□□□□ -0.39
COL7A1-209ENST00000474432 KCNS1Q96KK3 526 aa12.62□□□□□ -0.39
COL7A1-209ENST00000474432 SDF2L1Q9HCN8 221 aa12.62□□□□□ -0.39
COL7A1-209ENST00000474432 CXorf1O96002 111 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 DPPA3Q6W0C5 159 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 WFDC10BQ8IUB3 73 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 TMEM75Q8N9X5 138 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 OR4C5Q8NGB2 326 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 ACTR3CQ9C0K3 210 aaPredicted RBP12.61□□□□□ -0.39
COL7A1-209ENST00000474432 TMEM167BQ9NRX6 74 aa12.61□□□□□ -0.39
COL7A1-209ENST00000474432 GCGP01275 180 aa12.6□□□□□ -0.39
COL7A1-209ENST00000474432 ORM1P02763 201 aa12.6□□□□□ -0.39
COL7A1-209ENST00000474432 GATA1P15976 413 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-209ENST00000474432 SRIP30626 198 aa12.6□□□□□ -0.39
COL7A1-209ENST00000474432 FLI1Q01543 452 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-209ENST00000474432 LINC00479Q96M42 142 aa12.6□□□□□ -0.39
COL7A1-209ENST00000474432 C9orf85Q96MD7 179 aa12.6□□□□□ -0.39
COL7A1-209ENST00000474432 FXYD6-FXYD2A0A087WZ82 144 aa12.59□□□□□ -0.39
COL7A1-209ENST00000474432 CYB561D1Q8N8Q1 229 aa12.59□□□□□ -0.39
COL7A1-209ENST00000474432 INO80EQ8NBZ0 244 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-209ENST00000474432 OR2T35Q8NGX2 323 aa12.59□□□□□ -0.39
COL7A1-209ENST00000474432 NDFIP1Q9BT67 221 aa12.59□□□□□ -0.39
COL7A1-209ENST00000474432 A0A1W2PRE2 83 aa12.58□□□□□ -0.4
COL7A1-209ENST00000474432 TAAR5O14804 337 aa12.58□□□□□ -0.4
COL7A1-209ENST00000474432 RS1O15537 224 aa12.58□□□□□ -0.4
COL7A1-209ENST00000474432 PFN1P07737 140 aaKnown RBP12.58□□□□□ -0.4
COL7A1-209ENST00000474432 RNASE3P12724 160 aaKnown RBP12.58□□□□□ -0.4
COL7A1-209ENST00000474432 PRNTQ86SH4 94 aa12.58□□□□□ -0.4
COL7A1-209ENST00000474432 CYTL1Q9NRR1 136 aa12.58□□□□□ -0.4
COL7A1-209ENST00000474432 C9JCJ5 164 aa12.57□□□□□ -0.4
COL7A1-209ENST00000474432 DNAH10OSP0CZ25 163 aa12.57□□□□□ -0.4
COL7A1-209ENST00000474432 ZNF876PQ49A33 203 aa12.57□□□□□ -0.4
COL7A1-209ENST00000474432 SMUG1Q53HV7 270 aa12.57□□□□□ -0.4
COL7A1-209ENST00000474432 CFAP126Q5VTH2 177 aa12.57□□□□□ -0.4
COL7A1-209ENST00000474432 PCNPQ8WW12 178 aaKnown RBP12.57□□□□□ -0.4
COL7A1-209ENST00000474432 BORCS7-ASMTA0A0B4J1R7 106 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 TRAV34A0A0B4J273 112 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 CTXND1A0A1B0GTU2 59 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 PGPEP1LA6NFU8 196 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 K7EQM0 130 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 PTH2Q96A98 100 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 TXNDC17Q9BRA2 123 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 LY96Q9Y6Y9 160 aa12.56□□□□□ -0.4
COL7A1-209ENST00000474432 IGKV3D-20A0A0C4DH25 116 aa12.55□□□□□ -0.4
COL7A1-209ENST00000474432 FUSP35637 526 aaKnown RBP eCLIP12.55□□□□□ -0.4
COL7A1-209ENST00000474432 TIRAPP58753 221 aa12.55□□□□□ -0.4
COL7A1-209ENST00000474432 SLC25A29Q8N8R3 303 aa12.55□□□□□ -0.4
COL7A1-209ENST00000474432 FBLL1A6NHQ2 334 aaKnown RBP12.54□□□□□ -0.4
COL7A1-209ENST00000474432 FGF8P55075 233 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-209ENST00000474432 ZNF506Q5JVG8 444 aa12.54□□□□□ -0.4
COL7A1-209ENST00000474432 SAPCD1Q5SSQ6 148 aa12.54□□□□□ -0.4
COL7A1-209ENST00000474432 MAPKAPK5-AS1Q8N8E1 139 aa12.54□□□□□ -0.4
COL7A1-209ENST00000474432 ARL2-SNX15V9GYD0 113 aa12.54□□□□□ -0.4
COL7A1-209ENST00000474432 FAM74A7A6NL05 159 aa12.53□□□□□ -0.4
COL7A1-209ENST00000474432 UBE2G2P60604 165 aa12.53□□□□□ -0.4
COL7A1-209ENST00000474432 MSRB1Q9NZV6 116 aa12.53□□□□□ -0.4
COL7A1-209ENST00000474432 TRAV9-2A0A087WT02 112 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 A0A087WTM6 91 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 IGHV3-73A0A0B4J1V6 119 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 TRBV6-4A0A1B0GX49 114 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 K7EP13 123 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 CRIP1P50238 77 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 RGS21Q2M5E4 152 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 Q6ZSN1 163 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 NFE4Q86UQ8 179 aa12.52□□□□□ -0.41
COL7A1-209ENST00000474432 SMLR1H3BR10 107 aa12.51□□□□□ -0.41
COL7A1-209ENST00000474432 PEX7O00628 323 aa12.51□□□□□ -0.41
COL7A1-209ENST00000474432 ARPC5O15511 151 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms