RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 IGHV3-16A0A0C4DH30 117 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 A0A1W2PRE2 83 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 K7EQM0 130 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 PAX4O43316 350 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 ZNF80P51504 273 aaPredicted RBP12.39□□□□□ -0.43
UPF3A-203ENST00000474056 FHL2Q14192 279 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 CYB561D1Q8N8Q1 229 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 RASL10AQ92737 203 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 UPK3BQ9BT76 320 aa12.39□□□□□ -0.43
UPF3A-203ENST00000474056 MRPS16Q9Y3D3 137 aaKnown RBP12.39□□□□□ -0.43
UPF3A-203ENST00000474056 CRYBA4P53673 196 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 UBE2G2P60604 165 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 FLI1Q01543 452 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-203ENST00000474056 PRNTQ86SH4 94 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 TMEM75Q8N9X5 138 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 ZNF479Q96JC4 524 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 SDF2L1Q9HCN8 221 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 C11orf21Q9P2W6 132 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 PRO0255Q9UI72 69 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 ICOSQ9Y6W8 199 aa12.38□□□□□ -0.43
UPF3A-203ENST00000474056 GCGP01275 180 aa12.37□□□□□ -0.43
UPF3A-203ENST00000474056 OR11H4Q8NGC9 324 aa12.37□□□□□ -0.43
UPF3A-203ENST00000474056 TRAV34A0A0B4J273 112 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 TRGV4A0A0C4DH28 118 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 MAP1LC3B2A6NCE7 125 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 ZNF345Q14585 488 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 C6orf223Q8N319 242 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 KCNRGQ8N5I3 272 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 KCNS1Q96KK3 526 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 LINC00479Q96M42 142 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 KRTAP1-5Q9BYS1 174 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 MAP1LC3BQ9GZQ8 125 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 HHLA3Q9XRX5 114 aa12.36□□□□□ -0.43
UPF3A-203ENST00000474056 FAM74A7A6NL05 159 aa12.35□□□□□ -0.43
UPF3A-203ENST00000474056 M0R2P5 195 aa12.35□□□□□ -0.43
UPF3A-203ENST00000474056 PFN1P07737 140 aaKnown RBP12.35□□□□□ -0.43
UPF3A-203ENST00000474056 SLAQ13239 276 aa12.35□□□□□ -0.43
UPF3A-203ENST00000474056 SMUG1Q53HV7 270 aa12.35□□□□□ -0.43
UPF3A-203ENST00000474056 TRAV4A0A0B4J268 109 aa12.34□□□□□ -0.43
UPF3A-203ENST00000474056 IFNA7P01567 189 aa12.34□□□□□ -0.43
UPF3A-203ENST00000474056 TNP2Q05952 138 aa12.34□□□□□ -0.43
UPF3A-203ENST00000474056 ZFP69Q49AA0 526 aa12.34□□□□□ -0.43
UPF3A-203ENST00000474056 FBLL1A6NHQ2 334 aaKnown RBP12.33□□□□□ -0.44
UPF3A-203ENST00000474056 PEX7O00628 323 aa12.33□□□□□ -0.44
UPF3A-203ENST00000474056 FHITP49789 147 aa12.33□□□□□ -0.44
UPF3A-203ENST00000474056 ARL2-SNX15V9GYD0 113 aa12.33□□□□□ -0.44
UPF3A-203ENST00000474056 HMSDA8MTL9 139 aa12.32□□□□□ -0.44
UPF3A-203ENST00000474056 MRPL23Q16540 153 aaKnown RBP12.32□□□□□ -0.44
UPF3A-203ENST00000474056 TTC32Q5I0X7 151 aa12.32□□□□□ -0.44
UPF3A-203ENST00000474056 Q86TA4 180 aa12.32□□□□□ -0.44
UPF3A-203ENST00000474056 OR4C5Q8NGB2 326 aa12.32□□□□□ -0.44
UPF3A-203ENST00000474056 K7EQD1 137 aa12.31□□□□□ -0.44
UPF3A-203ENST00000474056 GYPEP15421 78 aa12.31□□□□□ -0.44
UPF3A-203ENST00000474056 SAPCD1Q5SSQ6 148 aa12.31□□□□□ -0.44
UPF3A-203ENST00000474056 HIST1H2BAQ96A08 127 aa12.31□□□□□ -0.44
UPF3A-203ENST00000474056 ZNF471Q9BX82 626 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-203ENST00000474056 NKX6-2Q9C056 277 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-203ENST00000474056 A0A0D9SG52 128 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 C9JCJ5 164 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 BCL2L11O43521 198 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 NXPH4O95158 308 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 SEC11BP0C7V7 166 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 PPT1P50897 306 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 LYPD5Q6UWN5 251 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 NEGR1Q7Z3B1 354 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 C9orf85Q96MD7 179 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 RYR1P21817 5038 aa12.3□□□□□ -0.44
UPF3A-203ENST00000474056 A0A1W2PPQ1 181 aa12.29□□□□□ -0.44
UPF3A-203ENST00000474056 KANTRA0A1W2PQU2 76 aa12.29□□□□□ -0.44
UPF3A-203ENST00000474056 SIVA1O15304 175 aa12.29□□□□□ -0.44
UPF3A-203ENST00000474056 RNASE3P12724 160 aaKnown RBP12.29□□□□□ -0.44
UPF3A-203ENST00000474056 SRIP30626 198 aa12.29□□□□□ -0.44
UPF3A-203ENST00000474056 DPPA3Q6W0C5 159 aa12.29□□□□□ -0.44
UPF3A-203ENST00000474056 IGKV3D-20A0A0C4DH25 116 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 LOC100131303A0A0U1RQF7 123 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 ORM1P02763 201 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 ZNF876PQ49A33 203 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 ZNF575Q86XF7 245 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 STOML3Q8TAV4 291 aa12.28□□□□□ -0.44
UPF3A-203ENST00000474056 PCNPQ8WW12 178 aaKnown RBP12.28□□□□□ -0.44
UPF3A-203ENST00000474056 LRP1BQ9NZR2 4599 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 PGPEP1LA6NFU8 196 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 RS1O15537 224 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 GATA1P15976 413 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-203ENST00000474056 ZNF506Q5JVG8 444 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 CST9LP1Q5W188 147 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 FAM213BQ8TBF2 198 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 ZC2HC1AQ96GY0 325 aa12.27□□□□□ -0.45
UPF3A-203ENST00000474056 DNAH5Q8TE73 4624 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 A0A1B0GV50 99 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 FABP5P3A8MUU1 101 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 UBE2G1P62253 170 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 CFAP126Q5VTH2 177 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 TMUB2Q71RG4 321 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 MBD3L1Q8WWY6 194 aa12.26□□□□□ -0.45
UPF3A-203ENST00000474056 IGHV3-73A0A0B4J1V6 119 aa12.25□□□□□ -0.45
UPF3A-203ENST00000474056 UMAD1C9J7I0 102 aa12.25□□□□□ -0.45
UPF3A-203ENST00000474056 PAGE4O60829 102 aa12.25□□□□□ -0.45
UPF3A-203ENST00000474056 CRIP1P50238 77 aa12.25□□□□□ -0.45
UPF3A-203ENST00000474056 LINC00315P59091 139 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms