RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 DEFB112Q30KQ8 113 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 SCN11AQ9UI33 1791 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 TRBV7-3A0A075B6L6 115 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 TRBV7-6A0A0J9YX20 115 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 CXCL6P80162 114 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 EBI3Q14213 229 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 ARFGEF2Q9Y6D5 1785 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 PDCD11Q14690 1871 aaKnown RBP7.04□□□□□ -1.28
COL6A3-210ENST00000473258 DOCK6Q96HP0 2047 aa7.04□□□□□ -1.28
COL6A3-210ENST00000473258 DSCR9P59020 149 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 C9orf85Q96MD7 179 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 H3BRN7 92 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 IGKV4-1P06312 121 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 DSCAML1Q8TD84 2053 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 EP300Q09472 2414 aaPredicted RBP7.03□□□□□ -1.28
COL6A3-210ENST00000473258 CELA2AP08217 269 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 C20orf204Q6ZNR8 217 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 ZFAND3Q9H8U3 227 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 TP53TG3Q9ULZ0 132 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 ATG2BQ96BY7 2078 aa7.03□□□□□ -1.28
COL6A3-210ENST00000473258 IGHV4OR15-8A0A075B7B6 117 aa7.02□□□□□ -1.28
COL6A3-210ENST00000473258 A0A087WW49 117 aa7.02□□□□□ -1.28
COL6A3-210ENST00000473258 IGHV1-58A0A0C4DH39 117 aa7.02□□□□□ -1.28
COL6A3-210ENST00000473258 NDUFA4L2Q9NRX3 87 aa7.02□□□□□ -1.28
COL6A3-210ENST00000473258 PIK3C2AO00443 1686 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 SRRM5B3KS81 715 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 TIRAPP58753 221 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 IL17DQ8TAD2 202 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 RPL39LQ96EH5 51 aaKnown RBP7.02□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV3-16A0A0C4DH30 117 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 TMEM178BH3BS89 294 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 WDR86Q86TI4 376 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 UBE2DNLQ8IWF7 75 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 C1orf147Q96MC9 270 aaPredicted RBP7.02□□□□□ -1.29
COL6A3-210ENST00000473258 A0A0J9YY99 117 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 SPAG11BQ08648 103 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 A0A0J9YXY3 114 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 EFNA2O43921 213 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 IGKV1-16P04430 117 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 ESRGQ1W209 222 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 MSRB1Q9NZV6 116 aa7.02□□□□□ -1.29
COL6A3-210ENST00000473258 PAPPAQ13219 1627 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 TAF1P21675 1872 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 A8MZ25 164 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 LST1O00453 97 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV3-30-3P0DP02 117 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 KIF13BQ9NQT8 1826 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 NCR3O14931 201 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 RHPN1-AS1Q9BWJ2 59 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV1-3A0A0C4DH29 117 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 SP5Q6BEB4 398 aaPredicted RBP7.01□□□□□ -1.29
COL6A3-210ENST00000473258 CCL19Q99731 98 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 ETDCA0A1B0GVM5 59 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 A0A1B0GXF2 115 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.01□□□□□ -1.29
COL6A3-210ENST00000473258 ITGBL1O95965 494 aaPredicted RBP7.01□□□□□ -1.29
COL6A3-210ENST00000473258 CCL4P13236 92 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 SHANK1Q9Y566 2161 aa7.01□□□□□ -1.29
COL6A3-210ENST00000473258 LY75O60449 1722 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 SPRY2O43597 315 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 ZNF134P52741 427 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 CMC4P56277 68 aaPredicted RBP7□□□□□ -1.29
COL6A3-210ENST00000473258 MAPKAPK5-AS1Q8N8E1 139 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7□□□□□ -1.29
COL6A3-210ENST00000473258 IGKV2-29A2NJV5 120 aaPredicted RBP7□□□□□ -1.29
COL6A3-210ENST00000473258 TEX22C9J3V5 150 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV3OR16-10A0A075B7F0 116 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 PRR19A6NJB7 356 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 CRYGAP11844 174 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 LY6DQ14210 128 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 MIR7-3HGQ8N6C7 128 aa7□□□□□ -1.29
COL6A3-210ENST00000473258 PTPRZ1P23471 2315 aaPredicted RBP7□□□□□ -1.29
COL6A3-210ENST00000473258 CAMTA1Q9Y6Y1 1673 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 RPL39P62891 51 aaKnown RBP6.99□□□□□ -1.29
COL6A3-210ENST00000473258 Q8N9L7 120 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 RPP25Q9BUL9 199 aaKnown RBP6.99□□□□□ -1.29
COL6A3-210ENST00000473258 CELA1Q9UNI1 258 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 WNK1Q9H4A3 2382 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 LINC01619G3V211 115 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 EDN2P20800 178 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 TMEM92Q6UXU6 159 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 PLAC8L1A1L4L8 177 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 C5orf63A6NC05 138 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 C17orf100A8MU93 164 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 K7ENP7 123 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 DIRC1Q969H9 104 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 WFDC10AQ9H1F0 79 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 CDIP1Q9H305 208 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 SPTAN1Q13813 2472 aaKnown RBP6.99□□□□□ -1.29
COL6A3-210ENST00000473258 PRYO14603 147 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 HOXB4P17483 251 aaPredicted RBP6.99□□□□□ -1.29
COL6A3-210ENST00000473258 FGF23Q9GZV9 251 aaPredicted RBP6.99□□□□□ -1.29
COL6A3-210ENST00000473258 KLK9Q9UKQ9 250 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 LENEPQ9Y5L5 61 aa6.99□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV1-69P01742 117 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV4-59P01825 116 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 IGHV4-30-2A0A087WSY4 118 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 E9PLN8 166 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 PCOLCEQ15113 449 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 SPINK13Q1W4C9 94 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms