RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 IQCF2Q8IXL9 164 aa8.27□□□□□ -1.09
SYNE1-221ENST00000472563 CYB561D1Q8N8Q1 229 aa8.27□□□□□ -1.09
SYNE1-221ENST00000472563 SGK494Q96LW2 274 aa8.27□□□□□ -1.09
SYNE1-221ENST00000472563 PSG8Q9UQ74 426 aa8.27□□□□□ -1.09
SYNE1-221ENST00000472563 HHLA3Q9XRX5 114 aa8.27□□□□□ -1.09
SYNE1-221ENST00000472563 CRYBA4P53673 196 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 FLI1Q01543 452 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-221ENST00000472563 TTC32Q5I0X7 151 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 C6orf223Q8N319 242 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 TMEM75Q8N9X5 138 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 C8orf49Q96NF6 230 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 SDF2L1Q9HCN8 221 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 ICOSQ9Y6W8 199 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 PKHD1P08F94 4074 aa8.26□□□□□ -1.09
SYNE1-221ENST00000472563 SMLR1H3BR10 107 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 M0R2P5 195 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 GCGP01275 180 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 TYMSP04818 313 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 ZNF80P51504 273 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-221ENST00000472563 SMUG1Q53HV7 270 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 SAPCD1Q5SSQ6 148 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 KCNRGQ8N5I3 272 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 ZNF479Q96JC4 524 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 NKX6-2Q9C056 277 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-221ENST00000472563 PCLOQ9Y6V0 5065 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 RYR1P21817 5038 aa8.25□□□□□ -1.09
SYNE1-221ENST00000472563 TRGV4A0A0C4DH28 118 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 A0A1W2PPQ1 181 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 IFNA7P01567 189 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 PFN1P07737 140 aaKnown RBP8.24□□□□□ -1.09
SYNE1-221ENST00000472563 SFTA3P0C7M3 94 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 ZNF345Q14585 488 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 MRPL23Q16540 153 aaKnown RBP8.24□□□□□ -1.09
SYNE1-221ENST00000472563 ZFP69Q49AA0 526 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 PRNTQ86SH4 94 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 C11orf21Q9P2W6 132 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 PKD1P98161 4303 aa8.24□□□□□ -1.09
SYNE1-221ENST00000472563 TRAV4A0A0B4J268 109 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 MAP1LC3B2A6NCE7 125 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 FAM74A7A6NL05 159 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 HMSDA8MTL9 139 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 BTF3P20290 206 aaKnown RBP8.23□□□□□ -1.09
SYNE1-221ENST00000472563 PPT1P50897 306 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 FGF8P55075 233 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-221ENST00000472563 UBE2G2P60604 165 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 OR4C5Q8NGB2 326 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 HIST1H2BAQ96A08 127 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 LINC00479Q96M42 142 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 KRTAP1-5Q9BYS1 174 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 MAP1LC3BQ9GZQ8 125 aa8.23□□□□□ -1.09
SYNE1-221ENST00000472563 A0A0D9SG52 128 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 PEX7O00628 323 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 ORM1P02763 201 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 TNP2Q05952 138 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 LYPD5Q6UWN5 251 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 NEGR1Q7Z3B1 354 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 OR11H4Q8NGC9 324 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 STOML3Q8TAV4 291 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 PTH2Q96A98 100 aa8.22□□□□□ -1.09
SYNE1-221ENST00000472563 TRAV34A0A0B4J273 112 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 UMAD1C9J7I0 102 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 SEC11BP0C7V7 166 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 FHITP49789 147 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 PCNPQ8WW12 178 aaKnown RBP8.21□□□□□ -1.1
SYNE1-221ENST00000472563 C9orf85Q96MD7 179 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 TCEAL7Q9BRU2 100 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 ARL2-SNX15V9GYD0 113 aa8.21□□□□□ -1.1
SYNE1-221ENST00000472563 FABP5P3A8MUU1 101 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 C9JCJ5 164 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 K7EQD1 137 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 SIVA1O15304 175 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 CIDEAO60543 219 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 NXPH4O95158 308 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 GYPEP15421 78 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 SRIP30626 198 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 ZNF876PQ49A33 203 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 COX8CQ7Z4L0 72 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 Q86TA4 180 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 MBD3L1Q8WWY6 194 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 NACAE9PAV3 2078 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 MUC4Q99102 2169 aa8.2□□□□□ -1.1
SYNE1-221ENST00000472563 IGKV3D-20A0A0C4DH25 116 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 TRBV6-1A0A0K0K1D8 114 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 KANTRA0A1W2PQU2 76 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 RS1O15537 224 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 BCL2L11O43521 198 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 MED14OSP0DP75 135 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 RNASE3P12724 160 aaKnown RBP8.19□□□□□ -1.1
SYNE1-221ENST00000472563 GATA1P15976 413 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-221ENST00000472563 EIF5AP63241 154 aaKnown RBP8.19□□□□□ -1.1
SYNE1-221ENST00000472563 SH2D6Q7Z4S9 175 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 FMC1Q96HJ9 113 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 TXNDC17Q9BRA2 123 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 ZNF471Q9BX82 626 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-221ENST00000472563 ZFP30Q9Y2G7 519 aa8.19□□□□□ -1.1
SYNE1-221ENST00000472563 CFAP126Q5VTH2 177 aa8.18□□□□□ -1.1
SYNE1-221ENST00000472563 CST9LP1Q5W188 147 aa8.18□□□□□ -1.1
SYNE1-221ENST00000472563 DPPA3Q6W0C5 159 aa8.18□□□□□ -1.1
SYNE1-221ENST00000472563 FAM213BQ8TBF2 198 aa8.18□□□□□ -1.1
SYNE1-221ENST00000472563 SFT2D1Q8WV19 159 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms