RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TDRG1Q3Y452 100 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 SDIM1Q6ZPB5 146 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 CROCCP3Q8IVE0 287 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 ATP6V0E2Q8NHE4 81 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 MGST2Q99735 147 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 GTSF1LQ9H1H1 148 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 MIXL1Q9H2W2 232 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 ZNF492Q9P255 531 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 KLK12Q9UKR0 248 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 KCNIP3Q9Y2W7 256 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 TRBV19A0A075B6N1 114 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 hDV102S1A0JD36 115 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 DISC1C4P0D8 188 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 K7EPK0 472 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 PHOX2AO14813 284 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 ZNF253O75346 499 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 IGKV2-30P06310 120 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 METTL15P1P0C7V9 234 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 SELENOTP62341 195 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 GAGE5Q13069 117 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 SURF2Q15527 256 aaPredicted RBP3.31□□□□□ -1.88
PTPN4-209ENST00000469511 MIC13Q5XKP0 118 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 FAM122CQ6P4D5 195 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 C9orf163Q8N9P6 203 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 UBE2WQ96B02 151 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 NAA50Q9GZZ1 169 aaKnown RBP3.31□□□□□ -1.88
PTPN4-209ENST00000469511 NPVFQ9HCQ7 196 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 PSENENQ9NZ42 101 aa3.31□□□□□ -1.88
PTPN4-209ENST00000469511 CCDC59Q9P031 241 aaKnown RBP3.31□□□□□ -1.88
PTPN4-209ENST00000469511 STRAPQ9Y3F4 350 aaKnown RBP3.31□□□□□ -1.88
PTPN4-209ENST00000469511 A0A087WYN8 130 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 MUC21A0A0G2JKD1 596 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 GGTLC3B5MD39 225 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 GOSR2O14653 212 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 COX7A2P2O60397 106 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 PFN1P07737 140 aaKnown RBP3.3□□□□□ -1.88
PTPN4-209ENST00000469511 AKAIN1P0CW23 69 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 LINC00694P0DN24 101 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 S100A7P31151 101 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 CAV2P51636 162 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 VWC2Q2TAL6 325 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 PAPPA-AS1Q5QFB9 102 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 CFAP126Q5VTH2 177 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 C10orf113Q5VZT2 155 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 TMEM14EPQ6UXP3 125 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 SH2D6Q7Z4S9 175 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 CLVS1Q8IUQ0 354 aaPredicted RBP3.3□□□□□ -1.88
PTPN4-209ENST00000469511 SPXQ9BT56 116 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 SAMD10Q9BYL1 202 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 SRRQ9GZT4 340 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 DPH3P1Q9H4G8 78 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 CACFD1Q9UGQ2 172 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 NAGKQ9UJ70 344 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 RAB26Q9ULW5 256 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 RABL2BQ9UNT1 228 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 KIF25-AS1Q9Y6Z4 181 aa3.3□□□□□ -1.88
PTPN4-209ENST00000469511 TRAV8-1A0A0A6YYK1 113 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 A0A0D9SG52 128 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 FBLL1A6NHQ2 334 aaKnown RBP3.29□□□□□ -1.88
PTPN4-209ENST00000469511 M0R2P5 195 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 SSSCA1O60232 199 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 MED6O75586 246 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 TYMSP04818 313 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 PRSS2P07478 247 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 ZNF266Q14584 549 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 GCSAMLQ5JQS6 135 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 WDR73Q6P4I2 378 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 ATRAIDQ6UW56 229 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 ENHOQ6UWT2 76 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 NIT1Q86X76 327 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 THAP6Q8TBB0 222 aa3.29□□□□□ -1.88
PTPN4-209ENST00000469511 MRPL53Q96EL3 112 aaKnown RBP3.29□□□□□ -1.88
PTPN4-209ENST00000469511 CIB3Q96Q77 187 aaPredicted RBP3.29□□□□□ -1.88
PTPN4-209ENST00000469511 IGLV5-37A0A075B6J1 123 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 TRBV6-4A0A1B0GX49 114 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 ANKRD20A5PA0PJZ0 165 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 C5orf51A6NDU8 294 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 NMBP08949 121 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 HIST1H1EP10412 219 aaKnown RBP3.28□□□□□ -1.88
PTPN4-209ENST00000469511 SLC25A6P12236 298 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 ZNF138P52744 262 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 PPP1R1AQ13522 171 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 CIRBPQ14011 172 aaKnown RBP3.28□□□□□ -1.88
PTPN4-209ENST00000469511 RHOHQ15669 191 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 GUK1Q16774 197 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 TMEM78Q5T7P6 136 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 Q6AWC8 147 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 KRTAP26-1Q6PEX3 210 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 FAM159AQ6UWV7 190 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 NRARPQ7Z6K4 114 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 ZNF546Q86UE3 836 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 C14orf178Q8N769 122 aaPredicted RBP3.28□□□□□ -1.88
PTPN4-209ENST00000469511 Q8N9P0 234 aaPredicted RBP3.28□□□□□ -1.88
PTPN4-209ENST00000469511 OR2T35Q8NGX2 323 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 SMIM4Q8WVI0 70 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 TVP23CQ96ET8 276 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 PHYHIPLQ96FC7 376 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 FAM167A-AS1Q96KT0 104 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 PRRT1Q99946 306 aa3.28□□□□□ -1.88
PTPN4-209ENST00000469511 PRADC1Q9BSG0 188 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms