RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 TDRG1Q3Y452 100 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 LBHQ53QV2 105 aaPredicted RBP5.72□□□□□ -1.49
COL6A3-208ENST00000468792 RNASEKQ6P5S7 137 aaKnown RBP5.72□□□□□ -1.49
COL6A3-208ENST00000468792 SMIM15Q7Z3B0 74 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 MRPL52Q86TS9 123 aaKnown RBP5.72□□□□□ -1.49
COL6A3-208ENST00000468792 RNF185Q96GF1 192 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 PRELID3AQ96N28 172 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 TPPP3Q9BW30 176 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 PEMTQ9UBM1 199 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 HSPB8Q9UJY1 196 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 CCDC168Q8NDH2 2452 aa5.72□□□□□ -1.49
COL6A3-208ENST00000468792 IGHV1-24A0A0C4DH33 117 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 A0A0J9YX75 114 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 D6R8Y8 96 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 TCF21O43680 179 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 NXPH4O95158 308 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 LEPROTL1O95214 131 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 RNASE1P07998 156 aaKnown RBP5.71□□□□□ -1.5
COL6A3-208ENST00000468792 ZNF705DP0CH99 300 aaPredicted RBP5.71□□□□□ -1.5
COL6A3-208ENST00000468792 ZNF705BP0CI00 300 aaPredicted RBP5.71□□□□□ -1.5
COL6A3-208ENST00000468792 CKS2P33552 79 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 LEPP41159 167 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 SYNJ2BPP57105 145 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 KRTDAPP60985 99 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 PRR9Q5T870 116 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 PET117Q6UWS5 81 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 FOXI2Q6ZQN5 318 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 Q6ZSV7 163 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 AMN1Q8IY45 258 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 FAM19A2Q8N3H0 131 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 PRSS3P2Q8NHM4 247 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 NDUFAF3Q9BU61 184 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 TMEM70Q9BUB7 260 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 SIGLEC8Q9NYZ4 499 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 TLN2Q9Y4G6 2542 aa5.71□□□□□ -1.5
COL6A3-208ENST00000468792 TRAV25A0A0B4J276 109 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 DNAJC9-AS1A6NH13 148 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 K7EMI3 77 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 TSPOP30536 169 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 ASIPP42127 132 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 DEFA6Q01524 100 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 FHL3Q13643 280 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 TCTEX1D4Q5JR98 221 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 EBLN2Q6P2I7 272 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 FA2HQ7L5A8 372 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 POM121L12Q8N7R1 296 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 OR9G4Q8NGQ1 327 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 OR1N2Q8NGR9 330 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 OR10AG1Q8NH19 301 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 MRAP2Q96G30 205 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 CLUHP3Q96NS8 147 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 VAMP8Q9BV40 100 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 NXT2Q9NPJ8 142 aaKnown RBP5.7□□□□□ -1.5
COL6A3-208ENST00000468792 RNF114Q9Y508 228 aa5.7□□□□□ -1.5
COL6A3-208ENST00000468792 NF1P21359 2839 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 SYS1-DBNDD2H3BUS1 97 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 M0R381 172 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 PPP1R17O96001 155 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 PRB4P10163 310 aaPredicted RBP5.69□□□□□ -1.5
COL6A3-208ENST00000468792 PSMG4Q5JS54 123 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 ADAMTSL5Q6ZMM2 481 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 DPF1Q92782 380 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 MIEN1Q9BRT3 115 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 MAP1LC3CQ9BXW4 147 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 MAP1LC3AQ9H492 121 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 MSRB1Q9NZV6 116 aa5.69□□□□□ -1.5
COL6A3-208ENST00000468792 GCN1Q92616 2671 aaKnown RBP5.68□□□□□ -1.5
COL6A3-208ENST00000468792 TRAV9-2A0A087WT02 112 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 C7orf71A4D174 169 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 NDUFA7O95182 113 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 TNFRSF6BO95407 300 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 CSN3P07498 182 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 RNASE3P12724 160 aaKnown RBP5.68□□□□□ -1.5
COL6A3-208ENST00000468792 EDN2P20800 178 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 RNASE4P34096 147 aaKnown RBP5.68□□□□□ -1.5
COL6A3-208ENST00000468792 IFI27P40305 119 aaPredicted RBP5.68□□□□□ -1.5
COL6A3-208ENST00000468792 CDKN1BP46527 198 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 HILS1P60008 231 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 ANXA2RQ3ZCQ2 193 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 SPANXN1Q5VSR9 72 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 OR11H1Q8NG94 326 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 C14orf144Q96I85 54 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 JMJD8Q96S16 334 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 C20orf78Q9BR46 151 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 ZNF747Q9BV97 191 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 PRO1933Q9H354 126 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 ESM1Q9NQ30 184 aa5.68□□□□□ -1.5
COL6A3-208ENST00000468792 IGLV2-18A0A075B6J9 118 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 A0A096LNJ9 63 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 F6UB75 175 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 H3BVH4 76 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 NPYP01303 97 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 HBDP02042 147 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 ZNF688P0C7X2 276 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 EVI2AP22794 236 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 S100A4P26447 101 aaKnown RBP5.67□□□□□ -1.5
COL6A3-208ENST00000468792 RPL32P62910 135 aaKnown RBP5.67□□□□□ -1.5
COL6A3-208ENST00000468792 PIK3CD-AS1Q5SR53 167 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 LINC01545Q5VT33 79 aa5.67□□□□□ -1.5
COL6A3-208ENST00000468792 FAM159AQ6UWV7 190 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms