RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TYMSP04818 313 aa14.65□□□□□ -0.06
HMGB3-205ENST00000455596 ZNF726P1Q15940 193 aa14.65□□□□□ -0.06
HMGB3-205ENST00000455596 CYB561D1Q8N8Q1 229 aa14.65□□□□□ -0.06
HMGB3-205ENST00000455596 C8orf49Q96NF6 230 aa14.65□□□□□ -0.06
HMGB3-205ENST00000455596 HECTD4Q9Y4D8 3996 aa14.65□□□□□ -0.06
HMGB3-205ENST00000455596 M0R2P5 195 aa14.64□□□□□ -0.07
HMGB3-205ENST00000455596 SFTA3P0C7M3 94 aa14.64□□□□□ -0.07
HMGB3-205ENST00000455596 FLI1Q01543 452 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-205ENST00000455596 ZFP69Q49AA0 526 aa14.64□□□□□ -0.07
HMGB3-205ENST00000455596 TMEM75Q8N9X5 138 aa14.64□□□□□ -0.07
HMGB3-205ENST00000455596 FBLL1A6NHQ2 334 aaKnown RBP14.63□□□□□ -0.07
HMGB3-205ENST00000455596 IGLV2-11P01706 119 aa14.63□□□□□ -0.07
HMGB3-205ENST00000455596 MRPL23Q16540 153 aaKnown RBP14.63□□□□□ -0.07
HMGB3-205ENST00000455596 PRNTQ86SH4 94 aa14.63□□□□□ -0.07
HMGB3-205ENST00000455596 ZNF479Q96JC4 524 aa14.63□□□□□ -0.07
HMGB3-205ENST00000455596 TRAV4A0A0B4J268 109 aa14.62□□□□□ -0.07
HMGB3-205ENST00000455596 A0A1W2PPQ1 181 aa14.62□□□□□ -0.07
HMGB3-205ENST00000455596 ZNF80P51504 273 aaPredicted RBP14.62□□□□□ -0.07
HMGB3-205ENST00000455596 CYTL1Q9NRR1 136 aa14.62□□□□□ -0.07
HMGB3-205ENST00000455596 SMLR1H3BR10 107 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 GCGP01275 180 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 PFN1P07737 140 aaKnown RBP14.61□□□□□ -0.07
HMGB3-205ENST00000455596 FGF8P55075 233 aaPredicted RBP14.61□□□□□ -0.07
HMGB3-205ENST00000455596 TNP2Q05952 138 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 SMUG1Q53HV7 270 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 SAPCD1Q5SSQ6 148 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 KRTAP1-5Q9BYS1 174 aa14.61□□□□□ -0.07
HMGB3-205ENST00000455596 IFNA7P01567 189 aa14.6□□□□□ -0.07
HMGB3-205ENST00000455596 UBE2G2P60604 165 aa14.6□□□□□ -0.07
HMGB3-205ENST00000455596 OR4C5Q8NGB2 326 aa14.6□□□□□ -0.07
HMGB3-205ENST00000455596 NKX6-2Q9C056 277 aaPredicted RBP14.6□□□□□ -0.07
HMGB3-205ENST00000455596 ZNF345Q14585 488 aa14.59□□□□□ -0.07
HMGB3-205ENST00000455596 NEGR1Q7Z3B1 354 aa14.59□□□□□ -0.07
HMGB3-205ENST00000455596 PCNPQ8WW12 178 aaKnown RBP14.59□□□□□ -0.07
HMGB3-205ENST00000455596 DNAH2Q9P225 4427 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 MAP1LC3B2A6NCE7 125 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 SIVA1O15304 175 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 ORM1P02763 201 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 SRIP30626 198 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 PPT1P50897 306 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 LYPD5Q6UWN5 251 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 MAP1LC3BQ9GZQ8 125 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 C11orf21Q9P2W6 132 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 FAT2Q9NYQ8 4349 aa14.58□□□□□ -0.08
HMGB3-205ENST00000455596 TRAV34A0A0B4J273 112 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 FAM74A7A6NL05 159 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 K7EQD1 137 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 PEX7O00628 323 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 NXPH4O95158 308 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 KCNRGQ8N5I3 272 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 LINC00479Q96M42 142 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 DNAH17Q9UFH2 4485 aa14.57□□□□□ -0.08
HMGB3-205ENST00000455596 C9JCJ5 164 aa14.56□□□□□ -0.08
HMGB3-205ENST00000455596 MED14OSP0DP75 135 aa14.56□□□□□ -0.08
HMGB3-205ENST00000455596 GYPEP15421 78 aa14.56□□□□□ -0.08
HMGB3-205ENST00000455596 BTF3P20290 206 aaKnown RBP14.56□□□□□ -0.08
HMGB3-205ENST00000455596 HIST1H2BAQ96A08 127 aa14.56□□□□□ -0.08
HMGB3-205ENST00000455596 ARL2-SNX15V9GYD0 113 aa14.56□□□□□ -0.08
HMGB3-205ENST00000455596 HMSDA8MTL9 139 aa14.55□□□□□ -0.08
HMGB3-205ENST00000455596 ZNF876PQ49A33 203 aa14.55□□□□□ -0.08
HMGB3-205ENST00000455596 STOML3Q8TAV4 291 aa14.55□□□□□ -0.08
HMGB3-205ENST00000455596 C9orf85Q96MD7 179 aa14.55□□□□□ -0.08
HMGB3-205ENST00000455596 Q86TA4 180 aa14.54□□□□□ -0.08
HMGB3-205ENST00000455596 ZNF575Q86XF7 245 aa14.54□□□□□ -0.08
HMGB3-205ENST00000455596 TXNDC17Q9BRA2 123 aa14.54□□□□□ -0.08
HMGB3-205ENST00000455596 A0A0D9SG52 128 aa14.53□□□□□ -0.08
HMGB3-205ENST00000455596 FABP5P3A8MUU1 101 aa14.53□□□□□ -0.08
HMGB3-205ENST00000455596 SEC11BP0C7V7 166 aa14.53□□□□□ -0.08
HMGB3-205ENST00000455596 OR11H4Q8NGC9 324 aa14.53□□□□□ -0.08
HMGB3-205ENST00000455596 CIDEAO60543 219 aa14.52□□□□□ -0.09
HMGB3-205ENST00000455596 KANTRA0A1W2PQU2 76 aa14.51□□□□□ -0.09
HMGB3-205ENST00000455596 RS1O15537 224 aa14.51□□□□□ -0.09
HMGB3-205ENST00000455596 RNASE3P12724 160 aaKnown RBP14.51□□□□□ -0.09
HMGB3-205ENST00000455596 GATA1P15976 413 aaPredicted RBP14.51□□□□□ -0.09
HMGB3-205ENST00000455596 FHITP49789 147 aa14.51□□□□□ -0.09
HMGB3-205ENST00000455596 LINC00315P59091 139 aa14.51□□□□□ -0.09
HMGB3-205ENST00000455596 PTH2Q96A98 100 aa14.51□□□□□ -0.09
HMGB3-205ENST00000455596 ZNF471Q9BX82 626 aaPredicted RBP14.51□□□□□ -0.09
HMGB3-205ENST00000455596 IGKV3D-20A0A0C4DH25 116 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 LOC100131303A0A0U1RQF7 123 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 PGPEP1LA6NFU8 196 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 UMAD1C9J7I0 102 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 BCL2L11O43521 198 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 S100A4P26447 101 aaKnown RBP14.5□□□□□ -0.09
HMGB3-205ENST00000455596 UBE2G1P62253 170 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 ZNF506Q5JVG8 444 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 CFAP126Q5VTH2 177 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 CST9LP1Q5W188 147 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 SH2D6Q7Z4S9 175 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 FMC1Q96HJ9 113 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 TCEAL7Q9BRU2 100 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 ZFP30Q9Y2G7 519 aa14.5□□□□□ -0.09
HMGB3-205ENST00000455596 PKD1P98161 4303 aa14.49□□□□□ -0.09
HMGB3-205ENST00000455596 DPPA3Q6W0C5 159 aa14.49□□□□□ -0.09
HMGB3-205ENST00000455596 LY96Q9Y6Y9 160 aa14.49□□□□□ -0.09
HMGB3-205ENST00000455596 C16orf90A8MZG2 172 aa14.48□□□□□ -0.09
HMGB3-205ENST00000455596 ASIPP42127 132 aa14.48□□□□□ -0.09
HMGB3-205ENST00000455596 EIF5AP63241 154 aaKnown RBP14.48□□□□□ -0.09
HMGB3-205ENST00000455596 NHLRC2Q8NBF2 726 aa14.48□□□□□ -0.09
HMGB3-205ENST00000455596 FAM213BQ8TBF2 198 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 223.8 ms