RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IGHV3-16A0A0C4DH30 117 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 K7EQM0 130 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 IGLV2-11P01706 119 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 TYMSP04818 313 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 ZNF479Q96JC4 524 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 KCNS1Q96KK3 526 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 NDFIP1Q9BT67 221 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 NAGKQ9UJ70 344 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 HHLA3Q9XRX5 114 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 DNAH5Q8TE73 4624 aa8.28□□□□□ -1.08
USP40-210ENST00000454354 TRAV4A0A0B4J268 109 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 TRGV4A0A0C4DH28 118 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 CTXND1A0A1B0GTU2 59 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 A0A1W2PRE2 83 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 FBLL1A6NHQ2 334 aaKnown RBP8.27□□□□□ -1.09
USP40-210ENST00000454354 M0R2P5 195 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 GNRH2O43555 120 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 SUMO1P63165 101 aaKnown RBP8.27□□□□□ -1.09
USP40-210ENST00000454354 ZNF726P1Q15940 193 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 CYB561D1Q8N8Q1 229 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 TMEM75Q8N9X5 138 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 SGK494Q96LW2 274 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 C8orf49Q96NF6 230 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 SDF2L1Q9HCN8 221 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 PSG8Q9UQ74 426 aa8.27□□□□□ -1.09
USP40-210ENST00000454354 TAAR5O14804 337 aa8.26□□□□□ -1.09
USP40-210ENST00000454354 SFTA3P0C7M3 94 aa8.26□□□□□ -1.09
USP40-210ENST00000454354 ZNF80P51504 273 aaPredicted RBP8.26□□□□□ -1.09
USP40-210ENST00000454354 FLI1Q01543 452 aaPredicted RBP8.26□□□□□ -1.09
USP40-210ENST00000454354 MRPL23Q16540 153 aaKnown RBP8.26□□□□□ -1.09
USP40-210ENST00000454354 ZNF575Q86XF7 245 aa8.26□□□□□ -1.09
USP40-210ENST00000454354 C11orf21Q9P2W6 132 aa8.26□□□□□ -1.09
USP40-210ENST00000454354 EPDR1Q9UM22 224 aa8.26□□□□□ -1.09
USP40-210ENST00000454354 K7EQD1 137 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 SIVA1O15304 175 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 NXPH4O95158 308 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 GCGP01275 180 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 ORM1P02763 201 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 PFN1P07737 140 aaKnown RBP8.25□□□□□ -1.09
USP40-210ENST00000454354 ZFP69Q49AA0 526 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 SMUG1Q53HV7 270 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 LYPD5Q6UWN5 251 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 CYTL1Q9NRR1 136 aa8.25□□□□□ -1.09
USP40-210ENST00000454354 ARPC5O15511 151 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 SRIP30626 198 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 SAPCD1Q5SSQ6 148 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 AKR1C8PQ5T2L2 129 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 NEGR1Q7Z3B1 354 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 OR4C5Q8NGB2 326 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 C9orf85Q96MD7 179 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 NKX6-2Q9C056 277 aaPredicted RBP8.24□□□□□ -1.09
USP40-210ENST00000454354 HSPG2P98160 4391 aa8.24□□□□□ -1.09
USP40-210ENST00000454354 GYPEP15421 78 aa8.23□□□□□ -1.09
USP40-210ENST00000454354 GATA1P15976 413 aaPredicted RBP8.23□□□□□ -1.09
USP40-210ENST00000454354 ZNF345Q14585 488 aa8.23□□□□□ -1.09
USP40-210ENST00000454354 Q6ZRN7 208 aaPredicted RBP8.23□□□□□ -1.09
USP40-210ENST00000454354 PRNTQ86SH4 94 aa8.23□□□□□ -1.09
USP40-210ENST00000454354 PCNPQ8WW12 178 aaKnown RBP8.23□□□□□ -1.09
USP40-210ENST00000454354 PTH2Q96A98 100 aa8.23□□□□□ -1.09
USP40-210ENST00000454354 APOBP04114 4563 aaKnown RBP8.22□□□□□ -1.09
USP40-210ENST00000454354 ABCA13Q86UQ4 5058 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 FAM74A7A6NL05 159 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 C9JCJ5 164 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 PEX7O00628 323 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 CIDEAO60543 219 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 LINC00315P59091 139 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 Q86TA4 180 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 TXNDC17Q9BRA2 123 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 ARL2-SNX15V9GYD0 113 aa8.22□□□□□ -1.09
USP40-210ENST00000454354 MAP1LC3B2A6NCE7 125 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 C16orf90A8MZG2 172 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 SMLR1H3BR10 107 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 RS1O15537 224 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 PPT1P50897 306 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 FGF8P55075 233 aaPredicted RBP8.21□□□□□ -1.1
USP40-210ENST00000454354 TIRAPP58753 221 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 UBE2G2P60604 165 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 ZNF876PQ49A33 203 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 CFAP126Q5VTH2 177 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 DPPA3Q6W0C5 159 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 COX8CQ7Z4L0 72 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 SH2D6Q7Z4S9 175 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 KCNRGQ8N5I3 272 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 HIST1H2BAQ96A08 127 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 LINC00479Q96M42 142 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 KRTAP17-1Q9BYP8 105 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 MAP1LC3BQ9GZQ8 125 aa8.21□□□□□ -1.1
USP40-210ENST00000454354 TRAV34A0A0B4J273 112 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 HMSDA8MTL9 139 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 K7EP13 123 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 IFNA7P01567 189 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 RNASE3P12724 160 aaKnown RBP8.2□□□□□ -1.1
USP40-210ENST00000454354 FHITP49789 147 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 ZNF506Q5JVG8 444 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 TCEAL7Q9BRU2 100 aa8.2□□□□□ -1.1
USP40-210ENST00000454354 IGKV3D-20A0A0C4DH25 116 aa8.19□□□□□ -1.1
USP40-210ENST00000454354 LOC100131303A0A0U1RQF7 123 aa8.19□□□□□ -1.1
USP40-210ENST00000454354 PIK3CD-AS1Q5SR53 167 aa8.19□□□□□ -1.1
USP40-210ENST00000454354 WFDC10BQ8IUB3 73 aa8.19□□□□□ -1.1
USP40-210ENST00000454354 OR11H4Q8NGC9 324 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms