RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C11orf45Q8TAV5 145 aa8.84□□□□□ -0.99
USP40-205ENST00000430158 C16orf74Q96GX8 76 aa8.84□□□□□ -0.99
USP40-205ENST00000430158 NDFIP1Q9BT67 221 aa8.84□□□□□ -0.99
USP40-205ENST00000430158 TRBV20OR9-2A0A075B6H5 130 aa8.83□□□□□ -1
USP40-205ENST00000430158 TRAV21A0A0B4J279 112 aa8.83□□□□□ -1
USP40-205ENST00000430158 C3orf84H3BNL1 204 aa8.83□□□□□ -1
USP40-205ENST00000430158 PDE6DO43924 150 aa8.83□□□□□ -1
USP40-205ENST00000430158 NDUFS6O75380 124 aaKnown RBP8.83□□□□□ -1
USP40-205ENST00000430158 PFN1P07737 140 aaKnown RBP8.83□□□□□ -1
USP40-205ENST00000430158 HTN1P15515 57 aa8.83□□□□□ -1
USP40-205ENST00000430158 RPL35P42766 123 aaKnown RBP8.83□□□□□ -1
USP40-205ENST00000430158 EMP1P54849 157 aa8.83□□□□□ -1
USP40-205ENST00000430158 MUC21Q5SSG8 566 aa8.83□□□□□ -1
USP40-205ENST00000430158 FAM210AQ96ND0 272 aa8.83□□□□□ -1
USP40-205ENST00000430158 NACAE9PAV3 2078 aa8.83□□□□□ -1
USP40-205ENST00000430158 RAB19A4D1S5 217 aa8.82□□□□□ -1
USP40-205ENST00000430158 CXorf65A6NEN9 183 aa8.82□□□□□ -1
USP40-205ENST00000430158 RGS13O14921 159 aa8.82□□□□□ -1
USP40-205ENST00000430158 SPART-AS1P0CW21 52 aa8.82□□□□□ -1
USP40-205ENST00000430158 UBE2G1P62253 170 aa8.82□□□□□ -1
USP40-205ENST00000430158 DAZ2Q13117 558 aaKnown RBP8.82□□□□□ -1
USP40-205ENST00000430158 ZNF674Q2M3X9 581 aa8.82□□□□□ -1
USP40-205ENST00000430158 IBA57Q5T440 356 aaKnown RBP8.82□□□□□ -1
USP40-205ENST00000430158 GSN-AS1Q9NRJ2 163 aa8.82□□□□□ -1
USP40-205ENST00000430158 MDFICQ9P1T7 246 aa8.82□□□□□ -1
USP40-205ENST00000430158 IGKV3D-20A0A0C4DH25 116 aa8.81□□□□□ -1
USP40-205ENST00000430158 IGHV3-16A0A0C4DH30 117 aa8.81□□□□□ -1
USP40-205ENST00000430158 CBY3A6NI87 242 aa8.81□□□□□ -1
USP40-205ENST00000430158 LYRM9A8MSI8 78 aa8.81□□□□□ -1
USP40-205ENST00000430158 TMEM250H0YL14 139 aa8.81□□□□□ -1
USP40-205ENST00000430158 GNRH2O43555 120 aa8.81□□□□□ -1
USP40-205ENST00000430158 TCL1AP56279 114 aa8.81□□□□□ -1
USP40-205ENST00000430158 TNP2Q05952 138 aa8.81□□□□□ -1
USP40-205ENST00000430158 TOR2AQ5JU69 321 aa8.81□□□□□ -1
USP40-205ENST00000430158 CASC10Q5T4H9 136 aa8.81□□□□□ -1
USP40-205ENST00000430158 Q6ZTC4 211 aa8.81□□□□□ -1
USP40-205ENST00000430158 ZNF767PQ75MW2 155 aa8.81□□□□□ -1
USP40-205ENST00000430158 BAGE2Q86Y30 109 aa8.81□□□□□ -1
USP40-205ENST00000430158 NOP10Q9NPE3 64 aaKnown RBP8.81□□□□□ -1
USP40-205ENST00000430158 MED9Q9NWA0 146 aa8.81□□□□□ -1
USP40-205ENST00000430158 TIMM8BQ9Y5J9 83 aaPredicted RBP8.81□□□□□ -1
USP40-205ENST00000430158 TEX48A0A1B0GUV7 120 aa8.8□□□□□ -1
USP40-205ENST00000430158 FABP5P3A8MUU1 101 aa8.8□□□□□ -1
USP40-205ENST00000430158 C9JQL5 133 aa8.8□□□□□ -1
USP40-205ENST00000430158 SPINK4O60575 86 aa8.8□□□□□ -1
USP40-205ENST00000430158 SH2D1AO60880 128 aa8.8□□□□□ -1
USP40-205ENST00000430158 TYMSP04818 313 aa8.8□□□□□ -1
USP40-205ENST00000430158 ZFAND6Q6FIF0 208 aa8.8□□□□□ -1
USP40-205ENST00000430158 NHLRC2Q8NBF2 726 aa8.8□□□□□ -1
USP40-205ENST00000430158 PHLDA1Q8WV24 401 aaPredicted RBP8.8□□□□□ -1
USP40-205ENST00000430158 LYSTQ99698 3801 aa8.8□□□□□ -1
USP40-205ENST00000430158 DNAH1Q9P2D7 4330 aa8.79□□□□□ -1
USP40-205ENST00000430158 SRP19P09132 144 aaKnown RBP8.79□□□□□ -1
USP40-205ENST00000430158 SRSF3P84103 164 aaKnown RBP8.79□□□□□ -1
USP40-205ENST00000430158 CENPWQ5EE01 88 aa8.79□□□□□ -1
USP40-205ENST00000430158 FAM162BQ5T6X4 162 aa8.79□□□□□ -1
USP40-205ENST00000430158 CEMP1Q6PRD7 247 aaPredicted RBP8.79□□□□□ -1
USP40-205ENST00000430158 FAM159AQ6UWV7 190 aa8.79□□□□□ -1
USP40-205ENST00000430158 KMT2CQ8NEZ4 4911 aaKnown RBP8.79□□□□□ -1
USP40-205ENST00000430158 TRGV11A0A075B6L2 103 aa8.78□□□□□ -1
USP40-205ENST00000430158 KRBOX1C9JBD0 128 aa8.78□□□□□ -1
USP40-205ENST00000430158 RNASE3P12724 160 aaKnown RBP8.78□□□□□ -1
USP40-205ENST00000430158 DNLZQ5SXM8 178 aa8.78□□□□□ -1
USP40-205ENST00000430158 Q6ZTI0 123 aa8.78□□□□□ -1
USP40-205ENST00000430158 SMIM12Q96EX1 92 aa8.78□□□□□ -1
USP40-205ENST00000430158 KCNS1Q96KK3 526 aa8.78□□□□□ -1
USP40-205ENST00000430158 C9orf85Q96MD7 179 aa8.78□□□□□ -1
USP40-205ENST00000430158 C18orf15Q96N68 181 aa8.78□□□□□ -1
USP40-205ENST00000430158 PARLQ9H300 379 aa8.78□□□□□ -1
USP40-205ENST00000430158 NAGKQ9UJ70 344 aa8.78□□□□□ -1
USP40-205ENST00000430158 C19orf71A6NCJ1 209 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 PGPEP1LA6NFU8 196 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 SNURFLB1AK76 121 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 C9JCJ5 164 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 CLLU1Q5K131 121 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 EIF5A2Q9GZV4 153 aaKnown RBP8.77□□□□□ -1.01
USP40-205ENST00000430158 SDF2L1Q9HCN8 221 aa8.77□□□□□ -1.01
USP40-205ENST00000430158 ALMS1Q8TCU4 4167 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 K7EN84 100 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 DEFB130BP0DP73 79 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 DEFB130AP0DP74 79 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 GNG4P50150 75 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 DAD1P61803 113 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 ZNF415Q09FC8 603 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 LGALS9BQ3B8N2 356 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 OCC1Q8TAD7 63 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 RASL10AQ92737 203 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 PTH2Q96A98 100 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 SPXQ9BT56 116 aa8.76□□□□□ -1.01
USP40-205ENST00000430158 DEFB131BA0A096LNP1 70 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 TRAV10A0A0B4J240 114 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 NUPR2A6NF83 97 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 POM121L12Q8N7R1 296 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 SMDT1Q9H4I9 107 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 SCRT2Q9NQ03 307 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 MRPL16Q9NX20 251 aaKnown RBP8.75□□□□□ -1.01
USP40-205ENST00000430158 VPS13DQ5THJ4 4388 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 SACSQ9NZJ4 4579 aa8.75□□□□□ -1.01
USP40-205ENST00000430158 TRGV1A0A0A0MS02 117 aa8.74□□□□□ -1.01
USP40-205ENST00000430158 GAGE12BA1L429 117 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms