RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 OVOS2A0A0J9YW53 1432 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 CPSF1Q10570 1443 aaKnown RBP1.78□□□□□ -2.12
USP40-204ENST00000427947 RIC1Q4ADV7 1423 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 OVOS2Q6IE36 1432 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 IGKV1D-42A0A075B6H8 117 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TRAV36DV7A0A075B6V5 113 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 ARRDC5A6NEK1 342 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 OR51F1A6NGY5 319 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 C19orf84I3L1E1 186 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 MT-ND6P03923 174 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 UBBP0CG47 229 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 COX6A1P12074 109 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 HLA-EP13747 358 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 HBBP68871 147 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 PSPHP78330 225 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 NNATQ16517 81 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TMEM155Q4W5P6 130 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 OR8I2Q8N0Y5 310 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TEX29Q8N6K0 151 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 AP1S3Q96PC3 154 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TSC22D3Q99576 134 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 Q9BRP9 147 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TMEM126AQ9H061 195 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 TCEAL2Q9H3H9 227 aaPredicted RBP1.78□□□□□ -2.12
USP40-204ENST00000427947 BCL2L10Q9HD36 194 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 SPANXCQ9NY87 97 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 RASL12Q9NYN1 266 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 CCDC88AQ3V6T2 1871 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 LRRC37A2A6NM11 1700 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 CD163L1Q9NR16 1453 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 SPTBN1Q01082 2364 aaKnown RBP1.77□□□□□ -2.13
USP40-204ENST00000427947 TRAV1-1A0A0B4J248 108 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 TMEM189A5PLL7 270 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 M0QZK8 103 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 OVOL1O14753 267 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 RER1O15258 196 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 HIST1H2BKO60814 126 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 IFNA4P05014 189 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 HIST1H2BJP06899 126 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 ZNF705BP0CI00 300 aaPredicted RBP1.77□□□□□ -2.13
USP40-204ENST00000427947 SDC4P31431 198 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 AKR1C3P42330 323 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 RPL35P42766 123 aaKnown RBP1.77□□□□□ -2.13
USP40-204ENST00000427947 ZNF345Q14585 488 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 VMA21Q3ZAQ7 101 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 RNASE10Q5GAN6 216 aaKnown RBP1.77□□□□□ -2.13
USP40-204ENST00000427947 Q6ZQT0 140 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 LINC00305Q7Z4B0 112 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 OR5D16Q8NGK9 328 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 TCEAL4Q96EI5 215 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 LXNQ9BS40 222 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 OR2H1Q9GZK4 316 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 CST9LQ9H4G1 147 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 NHP2Q9NX24 153 aaKnown RBP1.77□□□□□ -2.13
USP40-204ENST00000427947 HS3ST2Q9Y278 367 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 ANKRD26Q9UPS8 1709 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 COL6A6A6NMZ7 2263 aa1.77□□□□□ -2.13
USP40-204ENST00000427947 NFAT5O94916 1531 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 KTN1Q86UP2 1357 aaKnown RBP1.76□□□□□ -2.13
USP40-204ENST00000427947 MYH2Q9UKX2 1941 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 PLXND1Q9Y4D7 1925 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 SBF2Q86WG5 1849 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 SLX4Q8IY92 1834 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 A0A087WX48 190 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 BORCS7-ASMTA0A0B4J1R7 106 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 CLPSP04118 112 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 DBIP07108 87 aaKnown RBP1.76□□□□□ -2.13
USP40-204ENST00000427947 CTSDP07339 412 aaPredicted RBP1.76□□□□□ -2.13
USP40-204ENST00000427947 COX4I1P13073 169 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 HES1Q14469 280 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 ESRGQ1W209 222 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 SMIM21Q3B7S5 101 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 Q6ZTI0 123 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 DEFB128Q7Z7B8 93 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 PFDN5Q99471 154 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 SLC50A1Q9BRV3 221 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 TIMM21Q9BVV7 248 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 TAS2R4Q9NYW5 299 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 HSPB8Q9UJY1 196 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 PARP4Q9UKK3 1724 aaKnown RBP1.76□□□□□ -2.13
USP40-204ENST00000427947 USP54Q70EL1 1684 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 CSMD3Q7Z407 3707 aa1.76□□□□□ -2.13
USP40-204ENST00000427947 NYNRINQ9P2P1 1898 aaKnown RBP1.75□□□□□ -2.13
USP40-204ENST00000427947 ROCK2O75116 1388 aaKnown RBP1.75□□□□□ -2.13
USP40-204ENST00000427947 ANKRD36BQ8N2N9 1353 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 A0A0G2JQZ4 141 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 A0A1B0GX51 115 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 DPM2O94777 84 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 TNFSF15O95150 251 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 RPS28P62857 69 aaKnown RBP1.75□□□□□ -2.13
USP40-204ENST00000427947 KLRD1Q13241 179 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 SS18Q15532 418 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 SPANXN5Q5MJ07 72 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 C7orf65Q6ZTY9 151 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 C3orf56Q8N813 242 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 LINC00301Q8NCQ3 95 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 OR5H6Q8NGV6 325 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 ZNF418Q8TF45 676 aaPredicted RBP1.75□□□□□ -2.13
USP40-204ENST00000427947 BRK1Q8WUW1 75 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms