RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 RASL11AQ6T310 242 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 APRG1Q8IVJ8 170 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 STHQ8IWL8 128 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 ZFAND2AQ8N6M9 145 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 FER1L6-AS1Q8NA97 138 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 FRZBQ92765 325 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 FAM110AQ9BQ89 295 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 PYGO2Q9BRQ0 406 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF747Q9BV97 191 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 TPPP3Q9BW30 176 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 SRD5A3Q9H8P0 318 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 A0A1B0GUT8 65 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 A8MTW9 85 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 SNURFLB1AK76 121 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 M0R2Z0 102 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 IGKV3-20P01619 116 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 MED14OSP0DP75 135 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 ASIPP42127 132 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF80P51504 273 aaPredicted RBP4.43□□□□□ -1.7
HMGB3-202ENST00000419110 RAB4BP61018 213 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 NUTF2P61970 127 aaKnown RBP4.43□□□□□ -1.7
HMGB3-202ENST00000419110 RIGQ13278 110 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 SPINK13Q1W4C9 94 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 GFI1BQ5VTD9 330 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 FAM159AQ6UWV7 190 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 LINC00322Q6ZN03 302 aaPredicted RBP4.43□□□□□ -1.7
HMGB3-202ENST00000419110 NUP35Q8NFH5 326 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 KCNS1Q96KK3 526 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 PGLYRP4Q96LB8 373 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 FAM19A4Q96LR4 140 aa4.43□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF256Q9Y2P7 627 aaPredicted RBP4.43□□□□□ -1.7
HMGB3-202ENST00000419110 NIPBLQ6KC79 2804 aaeCLIP4.42□□□□□ -1.7
HMGB3-202ENST00000419110 TENM1Q9UKZ4 2725 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 TRGV11A0A075B6L2 103 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 H3BMM0 161 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 H3BVH4 76 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 SPINK4O60575 86 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 GZMBP10144 247 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 S100A4P26447 101 aaKnown RBP4.42□□□□□ -1.7
HMGB3-202ENST00000419110 RNASE4P34096 147 aaKnown RBP4.42□□□□□ -1.7
HMGB3-202ENST00000419110 CRIP1P50238 77 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 BEAN1Q3B7T3 259 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 AMTNQ6UX39 209 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 PRIMA1Q86XR5 153 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 CLUHP3Q96NS8 147 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 C20orf144Q9BQM9 153 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 TRAPPC1Q9Y5R8 145 aa4.42□□□□□ -1.7
HMGB3-202ENST00000419110 TRAV12-3A0A0B4J271 114 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 A0A1B0GXF2 115 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 RBMY1BA6NDE4 496 aaKnown RBP4.41□□□□□ -1.7
HMGB3-202ENST00000419110 RBMY1EA6NEQ0 496 aaKnown RBP4.41□□□□□ -1.7
HMGB3-202ENST00000419110 F2Z2F3 143 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 S100A6P06703 90 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 RBMY1DP0C7P1 496 aaKnown RBP4.41□□□□□ -1.7
HMGB3-202ENST00000419110 ARMS2P0C7Q2 107 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 IGLC6P0CF74 106 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 CACNG7P62955 275 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF415Q09FC8 603 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 MUC21Q5SSG8 566 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 MORN3Q6PF18 240 aaPredicted RBP4.41□□□□□ -1.7
HMGB3-202ENST00000419110 SMIM15Q7Z3B0 74 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 TRPT1Q86TN4 253 aaKnown RBP4.41□□□□□ -1.7
HMGB3-202ENST00000419110 TMEM256Q8N2U0 113 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 GTSF1Q8WW33 167 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 AP1S3Q96PC3 154 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 TMEM208Q9BTX3 173 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 C1QTNF4Q9BXJ3 329 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 GNB1LQ9BYB4 327 aa4.41□□□□□ -1.7
HMGB3-202ENST00000419110 STAB1Q9NY15 2570 aa4.4□□□□□ -1.7
HMGB3-202ENST00000419110 TRAV12-2A0A075B6T6 113 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 IGHV1OR15-1A0A075B7D0 117 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 IGKV3D-20A0A0C4DH25 116 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 GRIFINA4D1Z8 144 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 SNAI2O43623 268 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 TRGC2P03986 189 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 CD7P09564 240 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 OR5AL1P0C617 328 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 TRGC1P0CF51 173 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 CAMPP49913 170 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 FXYD7P58549 80 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 FABP9Q0Z7S8 132 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 ZNF124Q15973 351 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 ANXA2RQ3ZCQ2 193 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 PRR31Q5SQ13 230 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 SPANXN1Q5VSR9 72 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 LYZL1Q6UWQ5 148 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 TMEM136Q6ZRR5 245 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 ZFP82Q8N141 532 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 SYT8Q8NBV8 401 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 CNFNQ9BYD5 112 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 C11orf21Q9P2W6 132 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 ZMAT5Q9UDW3 170 aaKnown RBP4.4□□□□□ -1.71
HMGB3-202ENST00000419110 GOLT1BQ9Y3E0 138 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 PHLDA3Q9Y5J5 127 aa4.4□□□□□ -1.71
HMGB3-202ENST00000419110 TIMM8BQ9Y5J9 83 aaPredicted RBP4.4□□□□□ -1.71
HMGB3-202ENST00000419110 NOTCH3Q9UM47 2321 aa4.39□□□□□ -1.71
HMGB3-202ENST00000419110 CBY3A6NI87 242 aa4.39□□□□□ -1.71
HMGB3-202ENST00000419110 APCSP02743 223 aa4.39□□□□□ -1.71
HMGB3-202ENST00000419110 IGLL1P15814 213 aa4.39□□□□□ -1.71
HMGB3-202ENST00000419110 FOXA3P55318 350 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms