RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CD28P10747 220 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 HLA-DRB4P13762 266 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 C9orf66Q5T8R8 295 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 MORN3Q6PF18 240 aaPredicted RBP6.33□□□□□ -1.4
USP54-203ENST00000418501 HLA-DRB4X5D2U9 266 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 H3BVH4 76 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 K7EMI3 77 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 LEPROTL1O95214 131 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 CSN3P07498 182 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 C18orf32Q8TCD1 76 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 SPXQ9BT56 116 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 SSBP4Q9BWG4 385 aaPredicted RBP6.33□□□□□ -1.4
USP54-203ENST00000418501 ANKRD17O75179 2603 aaKnown RBP6.33□□□□□ -1.4
USP54-203ENST00000418501 C10orf99Q6UWK7 81 aa6.33□□□□□ -1.4
USP54-203ENST00000418501 LINC00322Q6ZN03 302 aaPredicted RBP6.33□□□□□ -1.4
USP54-203ENST00000418501 DMXL2Q8TDJ6 3036 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 MGPP08493 103 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 DEFB136Q30KP8 78 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 ANXA2RQ3ZCQ2 193 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 C11orf44Q8N8P7 122 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 C20orf173Q96LM9 149 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 CLUHP3Q96NS8 147 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 LINC01587Q99440 93 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 CNFNQ9BYD5 112 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 M0R381 172 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 CD33P20138 364 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 NIT1Q86X76 327 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 PTPN13Q12923 2485 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 TRAV12-3A0A0B4J271 114 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 SNAI2O43623 268 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 SLAQ13239 276 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 FAM110AQ9BQ89 295 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 VAMP8Q9BV40 100 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 IGKV3-20P01619 116 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 ZNF25P17030 456 aaPredicted RBP6.32□□□□□ -1.4
USP54-203ENST00000418501 CRIP1P50238 77 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 MUC21Q5SSG8 566 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 ZFAND2AQ8N6M9 145 aa6.32□□□□□ -1.4
USP54-203ENST00000418501 IGHV4-4A0A075B6R2 117 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 KLLNB2CW77 178 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 KRTAP1-1Q07627 177 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 MRPL52Q86TS9 123 aaKnown RBP6.31□□□□□ -1.4
USP54-203ENST00000418501 RHODO00212 210 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 ATP5LO75964 103 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 RBX1P62877 108 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 ORMDL2Q53FV1 153 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 APRG1Q8IVJ8 170 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 TMEM61Q8N0U2 210 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 INAFM1C9JVW0 142 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 D6R8Y8 96 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 TMEM70Q9BUB7 260 aa6.31□□□□□ -1.4
USP54-203ENST00000418501 FHL3Q13643 280 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 CD300EQ496F6 205 aaPredicted RBP6.3□□□□□ -1.4
USP54-203ENST00000418501 KIR2DL4Q99706 377 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 C20orf78Q9BR46 151 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 ESM1Q9NQ30 184 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 KIR2DL5BA0A0G2JN68 375 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 KIR2DL5BA0A0G2JPC4 375 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 A8MWV9 139 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 ZNF80P51504 273 aaPredicted RBP6.3□□□□□ -1.4
USP54-203ENST00000418501 PET117Q6UWS5 81 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 KIR2DL5AQ8N109 375 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 SPEGQ15772 3267 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 CSPG4Q6UVK1 2322 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 HBDP02042 147 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 TDRG1Q3Y452 100 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 MRPL51Q4U2R6 128 aaKnown RBP6.3□□□□□ -1.4
USP54-203ENST00000418501 MAP6D1Q9H9H5 199 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 FREM2Q5SZK8 3169 aa6.3□□□□□ -1.4
USP54-203ENST00000418501 CIDEAO60543 219 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 PROK1P58294 105 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 SPINK13Q1W4C9 94 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 PIK3CD-AS1Q5SR53 167 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 AMN1Q8IY45 258 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 ZFHX3Q15911 3703 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 F6UB75 175 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 ST20Q9HBF5 79 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 IGKV3D-20A0A0C4DH25 116 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 H3BMM0 161 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 M0R143 59 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 PAPPA-AS1Q5QFB9 102 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 SVIPQ8NHG7 77 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 RCHY1Q96PM5 261 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 HIVEP2P31629 2446 aa6.29□□□□□ -1.4
USP54-203ENST00000418501 USP9YO00507 2555 aaPredicted RBP6.28□□□□□ -1.4
USP54-203ENST00000418501 LOC389332A0A1B0GUA5 103 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 KNCNA6PVL3 124 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 FCER1GP30273 86 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 ZNF56Q15929 161 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 Q8N8P6 123 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 FAM19A4Q96LR4 140 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 COTL1Q14019 142 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 RRN3P1Q2M238 152 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 ZNF705AQ6ZN79 300 aaPredicted RBP6.28□□□□□ -1.4
USP54-203ENST00000418501 LINC00467Q9BRT7 94 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 U3KQK5 164 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 FRYQ5TBA9 3013 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 TNFRSF6BO95407 300 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 CR1P17927 2039 aa6.28□□□□□ -1.4
USP54-203ENST00000418501 Q6ZN92 141 aa6.27□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms