RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SPANXB1Q9NS25 103 aaPredicted RBP2.54□□□□□ -2
VPS54-204ENST00000416400 HLA-DRB4X5D2U9 266 aa2.54□□□□□ -2
VPS54-204ENST00000416400 YLPM1P49750 1951 aaKnown RBP2.54□□□□□ -2
VPS54-204ENST00000416400 TICRRQ7Z2Z1 1910 aa2.54□□□□□ -2
VPS54-204ENST00000416400 NUP205Q92621 2012 aa2.53□□□□□ -2
VPS54-204ENST00000416400 A0A1W2PRE2 83 aa2.53□□□□□ -2
VPS54-204ENST00000416400 FABP5P3A8MUU1 101 aa2.53□□□□□ -2
VPS54-204ENST00000416400 SNCGO76070 127 aa2.53□□□□□ -2
VPS54-204ENST00000416400 BRI3O95415 125 aa2.53□□□□□ -2
VPS54-204ENST00000416400 APOMO95445 188 aa2.53□□□□□ -2
VPS54-204ENST00000416400 MGST1P10620 155 aaKnown RBP2.53□□□□□ -2
VPS54-204ENST00000416400 NPPCP23582 126 aa2.53□□□□□ -2
VPS54-204ENST00000416400 GNG3P63215 75 aa2.53□□□□□ -2
VPS54-204ENST00000416400 HES1Q14469 280 aa2.53□□□□□ -2
VPS54-204ENST00000416400 DEFB134Q4QY38 66 aa2.53□□□□□ -2
VPS54-204ENST00000416400 ATOH7Q8N100 152 aa2.53□□□□□ -2
VPS54-204ENST00000416400 SMIM20Q8N5G0 67 aa2.53□□□□□ -2
VPS54-204ENST00000416400 GATD1Q8NB37 220 aa2.53□□□□□ -2
VPS54-204ENST00000416400 PPDPFLQ8WWR9 84 aa2.53□□□□□ -2
VPS54-204ENST00000416400 RAB37Q96AX2 223 aa2.53□□□□□ -2
VPS54-204ENST00000416400 DNAJC30Q96LL9 226 aa2.53□□□□□ -2
VPS54-204ENST00000416400 NPCDR1Q9BY65 106 aa2.53□□□□□ -2
VPS54-204ENST00000416400 MRPL32Q9BYC8 188 aaKnown RBP2.53□□□□□ -2
VPS54-204ENST00000416400 LCE3DQ9BYE3 92 aa2.53□□□□□ -2
VPS54-204ENST00000416400 VSIRQ9H7M9 311 aa2.53□□□□□ -2
VPS54-204ENST00000416400 PRTFDC1Q9NRG1 225 aa2.53□□□□□ -2
VPS54-204ENST00000416400 SS18L2Q9UHA2 77 aa2.53□□□□□ -2
VPS54-204ENST00000416400 LHFPL6Q9Y693 200 aa2.53□□□□□ -2
VPS54-204ENST00000416400 PDCD11Q14690 1871 aaKnown RBP2.53□□□□□ -2
VPS54-204ENST00000416400 COL11A1P12107 1806 aaPredicted RBP2.53□□□□□ -2
VPS54-204ENST00000416400 PARP14Q460N5 1801 aa2.53□□□□□ -2
VPS54-204ENST00000416400 NRXN2Q9P2S2 1712 aa2.53□□□□□ -2
VPS54-204ENST00000416400 LTBP4Q8N2S1 1624 aa2.53□□□□□ -2
VPS54-204ENST00000416400 NYNRINQ9P2P1 1898 aaKnown RBP2.52□□□□□ -2.01
VPS54-204ENST00000416400 TRAV8-2A0A0B4J237 113 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1-9A0A0C4DH69 117 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 UBE2L5PA0A1B0GUS4 154 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 C5orf49A4QMS7 147 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 C21orf140B9A014 251 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 IGLL5B9A064 214 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 K7EQS6 105 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 IGLV3-1P01715 115 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 ATP5G1P05496 136 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 GCHFRP30047 84 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 CD52P31358 61 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 RPS27P42677 84 aaKnown RBP2.52□□□□□ -2.01
VPS54-204ENST00000416400 ATP5G3P48201 142 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 PCBD1P61457 104 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 RPL30P62888 115 aaKnown RBP2.52□□□□□ -2.01
VPS54-204ENST00000416400 HBBP68871 147 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 PSG4Q00888 419 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 PLGLB1Q02325 96 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 TMEM215Q68D42 235 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 Q6AWC8 147 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 ZNF818PQ6ZRF7 136 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 Q6ZUT4 128 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 VN1R4Q7Z5H5 301 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 LYPD1Q8N2G4 141 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 RPRMLQ8N4K4 120 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 NUP35Q8NFH5 326 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 IMUPQ9GZP8 106 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 AICDAQ9GZX7 198 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 IDI2-AS1Q9NZ38 188 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 LINC00312Q9Y6C7 94 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 ZNF236Q9UL36 1845 aa2.52□□□□□ -2.01
VPS54-204ENST00000416400 LOC285556D6RIA3 1793 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 THADAQ6YHU6 1953 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 A0A1B0GX51 115 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 A8MWV9 139 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 GGTLC3B5MD39 225 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 H0YGG7 62 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 K7ERS5 55 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 SLC31A1O15431 190 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 FSTL3O95633 263 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1D-33P01593 117 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1-33P01594 117 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 IAPPP10997 89 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 RBM11P57052 281 aaKnown RBP2.51□□□□□ -2.01
VPS54-204ENST00000416400 WFDC2Q14508 124 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 ETDBQ3ZM63 59 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 CENPWQ5EE01 88 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 TMEM78Q5T7P6 136 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 C2orf91Q6ZV80 131 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 SSX8Q7RTT4 187 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 AMN1Q8IY45 258 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 C1orf64Q8NEQ6 169 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 WFDC5Q8TCV5 224 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 FXYD5Q96DB9 178 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 ENY2Q9NPA8 101 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 GPR179Q6PRD1 2367 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 NINQ8N4C6 2090 aa2.51□□□□□ -2.01
VPS54-204ENST00000416400 ALPK3Q96L96 1907 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 A0A087WX48 190 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 IGHV3-43A0A0B4J1X8 118 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 TRAV5A0A0B4J249 113 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 F2Z2F3 143 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 J3KT08 172 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 M0R135 149 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 SLC25A5P05141 298 aaKnown RBP2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 232.4 ms