RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 LINC00479Q96M42 142 aa10.4□□□□□ -0.74
LIMS1-206ENST00000414829 VAX2Q9UIW0 290 aa10.4□□□□□ -0.74
LIMS1-206ENST00000414829 IGHV4-4A0A075B6R2 117 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 TRGV1A0A0A0MS02 117 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 FAM162BQ5T6X4 162 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 C15orf53Q8NAA6 179 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 SMIM12Q96EX1 92 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 C8orf49Q96NF6 230 aa10.39□□□□□ -0.75
LIMS1-206ENST00000414829 GAGE12BA1L429 117 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 SPINK4O60575 86 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 GAGE7O76087 117 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 GAGE12FP0CL80 117 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 GAGE12GP0CL81 117 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 GAGE12IP0CL82 117 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 CCL20P78556 96 aa10.38□□□□□ -0.75
LIMS1-206ENST00000414829 F5H768 121 aa10.37□□□□□ -0.75
LIMS1-206ENST00000414829 BAGE2Q86Y30 109 aa10.37□□□□□ -0.75
LIMS1-206ENST00000414829 BOLA1Q9Y3E2 137 aa10.37□□□□□ -0.75
LIMS1-206ENST00000414829 STARD9Q9P2P6 4700 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 IGHV3-16A0A0C4DH30 117 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 M0R2P5 195 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 TYMSP04818 313 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 RPL35P42766 123 aaKnown RBP10.36□□□□□ -0.75
LIMS1-206ENST00000414829 ZNF80P51504 273 aaPredicted RBP10.36□□□□□ -0.75
LIMS1-206ENST00000414829 LGALS9CQ6DKI2 356 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 Q6ZTI0 123 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 LYPD6BQ8NI32 183 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 LINC00476Q8WZB0 136 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 BIN3Q9NQY0 253 aa10.36□□□□□ -0.75
LIMS1-206ENST00000414829 S100A4P26447 101 aaKnown RBP10.35□□□□□ -0.75
LIMS1-206ENST00000414829 ASIPP42127 132 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 SLAQ13239 276 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 Q6ZQT7 251 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 RASL10AQ92737 203 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 ZC2HC1AQ96GY0 325 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 MDFICQ9P1T7 246 aa10.35□□□□□ -0.75
LIMS1-206ENST00000414829 B4DEV8 164 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 H3BNG1 76 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 SH2D1AO60880 128 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 NDUFS6O75380 124 aaKnown RBP10.34□□□□□ -0.75
LIMS1-206ENST00000414829 ORM1P02763 201 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 P0DMU3 169 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 FAM231AP0DMU4 169 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 FAM231CP0DMU5 169 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 GNG4P50150 75 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 ZNF674Q2M3X9 581 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 TMEM88Q6PEY1 159 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 MED9Q9NWA0 146 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 APLNQ9ULZ1 77 aa10.34□□□□□ -0.75
LIMS1-206ENST00000414829 TMEM250H0YL14 139 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 CIDEAO60543 219 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 LY6G6CO95867 125 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 LINC01559Q495D7 138 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 PIK3CD-AS1Q5SR53 167 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 TEX261Q6UWH6 196 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 PTH2Q96A98 100 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 MLST8Q9BVC4 326 aa10.33□□□□□ -0.76
LIMS1-206ENST00000414829 MRPL16Q9NX20 251 aaKnown RBP10.33□□□□□ -0.76
LIMS1-206ENST00000414829 RBFOX3A6NFN3 312 aa10.32□□□□□ -0.76
LIMS1-206ENST00000414829 GNRH2O43555 120 aa10.32□□□□□ -0.76
LIMS1-206ENST00000414829 CXCL1P09341 107 aa10.32□□□□□ -0.76
LIMS1-206ENST00000414829 CENPWQ5EE01 88 aa10.32□□□□□ -0.76
LIMS1-206ENST00000414829 IL36BQ9NZH7 164 aa10.32□□□□□ -0.76
LIMS1-206ENST00000414829 CSMD3Q7Z407 3707 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 TRAV4A0A0B4J268 109 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 OR5I1Q13606 314 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 ZNF506Q5JVG8 444 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 DNLZQ5SXM8 178 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 SYT8Q8NBV8 401 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 C9orf85Q96MD7 179 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 EIF5A2Q9GZV4 153 aaKnown RBP10.31□□□□□ -0.76
LIMS1-206ENST00000414829 C11orf21Q9P2W6 132 aa10.31□□□□□ -0.76
LIMS1-206ENST00000414829 IGKV3D-20A0A0C4DH25 116 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 KRBOX1C9JBD0 128 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 ZNF876PQ49A33 203 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 NHLRC2Q8NBF2 726 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 DAZAP1Q96EP5 407 aaKnown RBP10.3□□□□□ -0.76
LIMS1-206ENST00000414829 DERL1Q9BUN8 251 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 PRO0255Q9UI72 69 aa10.3□□□□□ -0.76
LIMS1-206ENST00000414829 KMT2CQ8NEZ4 4911 aaKnown RBP10.3□□□□□ -0.76
LIMS1-206ENST00000414829 TRAV26-1A0A087WT03 109 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 XKRY2A2RUG3 117 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 C9JCJ5 164 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 M0R036 132 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 MED14OSP0DP75 135 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 MGST1P10620 155 aaKnown RBP10.29□□□□□ -0.76
LIMS1-206ENST00000414829 CRIP1P50238 77 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 FAM3BP58499 235 aaPredicted RBP10.29□□□□□ -0.76
LIMS1-206ENST00000414829 TOR2AQ5JU69 321 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 PRR27Q6MZM9 219 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 OR4C5Q8NGB2 326 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 FAM210AQ96ND0 272 aa10.29□□□□□ -0.76
LIMS1-206ENST00000414829 TRGV4A0A0C4DH28 118 aa10.28□□□□□ -0.76
LIMS1-206ENST00000414829 RNASE3P12724 160 aaKnown RBP10.28□□□□□ -0.76
LIMS1-206ENST00000414829 RPS20P60866 119 aaKnown RBP10.28□□□□□ -0.76
LIMS1-206ENST00000414829 UBE2DNLQ8IWF7 75 aa10.28□□□□□ -0.76
LIMS1-206ENST00000414829 A8MWV9 139 aa10.27□□□□□ -0.77
LIMS1-206ENST00000414829 H3BVH4 76 aa10.27□□□□□ -0.77
LIMS1-206ENST00000414829 NUDT3O95989 172 aa10.27□□□□□ -0.77
LIMS1-206ENST00000414829 HOXA5P20719 270 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms