RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 DNAJC30Q96LL9 226 aa13.51□□□□□ -0.25
PHRF1-202ENST00000413872 IGF2BP2-AS1Q96M15 143 aa13.51□□□□□ -0.25
PHRF1-202ENST00000413872 CACNA1AO00555 2505 aa13.51□□□□□ -0.25
PHRF1-202ENST00000413872 K7EMI3 77 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 CRYGCP07315 174 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 CTSGP08311 255 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 Q8N7P7 452 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 IGKV1-17P01599 117 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 LAMTOR3Q9UHA4 124 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 IGHG2P01859 326 aa13.5□□□□□ -0.25
PHRF1-202ENST00000413872 MRPL52Q86TS9 123 aaKnown RBP13.49□□□□□ -0.25
PHRF1-202ENST00000413872 ADAMTS9Q9P2N4 1935 aa13.49□□□□□ -0.25
PHRF1-202ENST00000413872 SPG11Q96JI7 2443 aa13.49□□□□□ -0.25
PHRF1-202ENST00000413872 C16orf54Q6UWD8 224 aa13.49□□□□□ -0.25
PHRF1-202ENST00000413872 WIPF2Q8TF74 440 aaPredicted RBP13.49□□□□□ -0.25
PHRF1-202ENST00000413872 CLPSL1A2RUU4 121 aa13.49□□□□□ -0.25
PHRF1-202ENST00000413872 TRAV8-4A0A0B4J246 113 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 KLF12Q9Y4X4 402 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 CDK2AP2O75956 126 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 C17orf77Q96MU5 243 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 U3KQE9 123 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 F6UB75 175 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 HERVK_113P63121 156 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 PYY3Q5JQD4 70 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 SH2D6Q7Z4S9 175 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 GPHB5Q86YW7 130 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 C16orf74Q96GX8 76 aa13.48□□□□□ -0.25
PHRF1-202ENST00000413872 NOP10Q9NPE3 64 aaKnown RBP13.48□□□□□ -0.25
PHRF1-202ENST00000413872 HIVEP2P31629 2446 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 IGHV3-38A0A0C4DH36 116 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 BUB3O43684 328 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 FSTL3O95633 263 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 HLA-DMBP28068 263 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 NKAPP1Q8N9T2 125 aa13.47□□□□□ -0.25
PHRF1-202ENST00000413872 DLX4Q92988 240 aaPredicted RBP13.47□□□□□ -0.25
PHRF1-202ENST00000413872 OTOGLQ3ZCN5 2332 aa13.46□□□□□ -0.25
PHRF1-202ENST00000413872 TRAV26-2A0A0B4J265 109 aa13.46□□□□□ -0.25
PHRF1-202ENST00000413872 ANGP03950 147 aaKnown RBP13.46□□□□□ -0.25
PHRF1-202ENST00000413872 TNFRSF13BO14836 293 aaPredicted RBP13.46□□□□□ -0.26
PHRF1-202ENST00000413872 PIFOQ8TCI5 191 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 MEGF9Q9H1U4 602 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 SIGLEC8Q9NYZ4 499 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 PKIGQ9Y2B9 76 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 A0A087X0K7 114 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 SPART-AS1P0CW21 52 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 LGALS9BQ3B8N2 356 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 C10orf91Q5T1B1 145 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 LGALS9CQ6DKI2 356 aa13.46□□□□□ -0.26
PHRF1-202ENST00000413872 NPYP01303 97 aa13.45□□□□□ -0.26
PHRF1-202ENST00000413872 IGLV2-23P01705 113 aa13.45□□□□□ -0.26
PHRF1-202ENST00000413872 KLF5Q13887 457 aaPredicted RBP13.45□□□□□ -0.26
PHRF1-202ENST00000413872 MSMPQ1L6U9 139 aa13.45□□□□□ -0.26
PHRF1-202ENST00000413872 RITA1Q96K30 269 aa13.45□□□□□ -0.26
PHRF1-202ENST00000413872 NAA38Q9BRA0 125 aaKnown RBP13.45□□□□□ -0.26
PHRF1-202ENST00000413872 VWC2LB2RUY7 222 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 WISP2O76076 250 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 IGHV4OR15-8A0A075B7B6 117 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 A0A087WW49 117 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 EGR2P11161 476 aaPredicted RBP13.44□□□□□ -0.26
PHRF1-202ENST00000413872 INSL3P51460 131 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 C4orf3Q8WVX3 66 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 C2orf70A6NJV1 201 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 TEX22C9J3V5 150 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 MPV17L2Q567V2 206 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 PIEZO1Q92508 2521 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 NCKAP5O14513 1909 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 A6NDX4 124 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 F8VRH5 84 aa13.44□□□□□ -0.26
PHRF1-202ENST00000413872 C2orf82Q6UX34 121 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 ZNF48Q96MX3 618 aaPredicted RBP13.43□□□□□ -0.26
PHRF1-202ENST00000413872 GNRH2O43555 120 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 STPG4Q8N801 248 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 OBSL1O75147 1896 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 WI2-2373I1.2A0A1W2PRP0 233 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 ATP5G1P05496 136 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 LYPD6BQ8NI32 183 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 ZNF625Q96I27 306 aaPredicted RBP13.43□□□□□ -0.26
PHRF1-202ENST00000413872 LMO4P61968 165 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 CFHR4Q92496 578 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 PLCE1Q9P212 2302 aa13.43□□□□□ -0.26
PHRF1-202ENST00000413872 APRG1Q8IVJ8 170 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 EML6Q6ZMW3 1958 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 ODF3L1Q8IXM7 274 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 NDUFA12Q9UI09 145 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 MRPL23Q16540 153 aaKnown RBP13.42□□□□□ -0.26
PHRF1-202ENST00000413872 MRAPQ8TCY5 172 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 TMEM131Q92545 1883 aa13.42□□□□□ -0.26
PHRF1-202ENST00000413872 COL4A4P53420 1690 aaPredicted RBP13.42□□□□□ -0.26
PHRF1-202ENST00000413872 CD5LO43866 347 aa13.41□□□□□ -0.26
PHRF1-202ENST00000413872 KIR3DS1Q14943 382 aa13.41□□□□□ -0.26
PHRF1-202ENST00000413872 PFN2P35080 140 aa13.41□□□□□ -0.26
PHRF1-202ENST00000413872 A0A1B0GV72 72 aa13.41□□□□□ -0.26
PHRF1-202ENST00000413872 LINC00574Q9H8X3 128 aa13.41□□□□□ -0.26
PHRF1-202ENST00000413872 COL4A3Q01955 1670 aa13.4□□□□□ -0.26
PHRF1-202ENST00000413872 C20orf144Q9BQM9 153 aa13.4□□□□□ -0.26
PHRF1-202ENST00000413872 PATE2Q6UY27 113 aa13.39□□□□□ -0.27
PHRF1-202ENST00000413872 ICOSQ9Y6W8 199 aa13.39□□□□□ -0.27
PHRF1-202ENST00000413872 CGB3P0DN86 165 aa13.39□□□□□ -0.27
PHRF1-202ENST00000413872 SPANXA1Q9NS26 97 aa13.39□□□□□ -0.27
PHRF1-202ENST00000413872 A0A096LPF7 62 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms