RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CRYBA4P53673 196 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 UBE2G2P60604 165 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 TMEM75Q8N9X5 138 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 RASL10AQ92737 203 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 ZNF479Q96JC4 524 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 Q9H8V8 135 aa13.14□□□□□ -0.31
SF3A1-202ENST00000411423 TRAV34A0A0B4J273 112 aa13.13□□□□□ -0.31
SF3A1-202ENST00000411423 SERTM2A0A1B0GWG4 89 aa13.13□□□□□ -0.31
SF3A1-202ENST00000411423 A0A1W2PRE2 83 aa13.13□□□□□ -0.31
SF3A1-202ENST00000411423 TAAR5O14804 337 aa13.13□□□□□ -0.31
SF3A1-202ENST00000411423 UPK3BQ9BT76 320 aa13.13□□□□□ -0.31
SF3A1-202ENST00000411423 MRPS16Q9Y3D3 137 aaKnown RBP13.13□□□□□ -0.31
SF3A1-202ENST00000411423 PAX4O43316 350 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 FHITP49789 147 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 FLI1Q01543 452 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-202ENST00000411423 AKR1C8PQ5T2L2 129 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 PRNTQ86SH4 94 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 KCNRGQ8N5I3 272 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 CYB561D1Q8N8Q1 229 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 SPXQ9BT56 116 aa13.12□□□□□ -0.31
SF3A1-202ENST00000411423 FAM74A7A6NL05 159 aa13.11□□□□□ -0.31
SF3A1-202ENST00000411423 GCGP01275 180 aa13.11□□□□□ -0.31
SF3A1-202ENST00000411423 TNP2Q05952 138 aa13.11□□□□□ -0.31
SF3A1-202ENST00000411423 PRO0255Q9UI72 69 aa13.11□□□□□ -0.31
SF3A1-202ENST00000411423 HHLA3Q9XRX5 114 aa13.11□□□□□ -0.31
SF3A1-202ENST00000411423 NDFIP1Q9BT67 221 aa13.1□□□□□ -0.31
SF3A1-202ENST00000411423 MAP1LC3B2A6NCE7 125 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 ZNF345Q14585 488 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 C6orf223Q8N319 242 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 MAP1LC3BQ9GZQ8 125 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 SDF2L1Q9HCN8 221 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 ICOSQ9Y6W8 199 aa13.09□□□□□ -0.31
SF3A1-202ENST00000411423 RYR1P21817 5038 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 TRGV4A0A0C4DH28 118 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 K7EQM0 130 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 M0R2P5 195 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 PEX7O00628 323 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 PFN1P07737 140 aaKnown RBP13.08□□□□□ -0.32
SF3A1-202ENST00000411423 DPPA3Q6W0C5 159 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 ARL2-SNX15V9GYD0 113 aa13.08□□□□□ -0.32
SF3A1-202ENST00000411423 TRAV4A0A0B4J268 109 aa13.07□□□□□ -0.32
SF3A1-202ENST00000411423 HMSDA8MTL9 139 aa13.07□□□□□ -0.32
SF3A1-202ENST00000411423 SMUG1Q53HV7 270 aa13.07□□□□□ -0.32
SF3A1-202ENST00000411423 SOHLH1Q5JUK2 328 aa13.07□□□□□ -0.32
SF3A1-202ENST00000411423 KCNS1Q96KK3 526 aa13.07□□□□□ -0.32
SF3A1-202ENST00000411423 LOC100131303A0A0U1RQF7 123 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 K7EQD1 137 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 IFNA7P01567 189 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 RNASE3P12724 160 aaKnown RBP13.06□□□□□ -0.32
SF3A1-202ENST00000411423 LYPD5Q6UWN5 251 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 Q86TA4 180 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 C9orf85Q96MD7 179 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 LRP1BQ9NZR2 4599 aa13.06□□□□□ -0.32
SF3A1-202ENST00000411423 IGKV3D-20A0A0C4DH25 116 aa13.05□□□□□ -0.32
SF3A1-202ENST00000411423 BCL2L11O43521 198 aa13.05□□□□□ -0.32
SF3A1-202ENST00000411423 CRIP1P50238 77 aa13.05□□□□□ -0.32
SF3A1-202ENST00000411423 SLAQ13239 276 aa13.05□□□□□ -0.32
SF3A1-202ENST00000411423 PGPEP1LA6NFU8 196 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 C9JCJ5 164 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 SEC11BP0C7V7 166 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 SAPCD1Q5SSQ6 148 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 ZNF575Q86XF7 245 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 OR4C5Q8NGB2 326 aa13.04□□□□□ -0.32
SF3A1-202ENST00000411423 FBLL1A6NHQ2 334 aaKnown RBP13.03□□□□□ -0.32
SF3A1-202ENST00000411423 NXPH4O95158 308 aa13.03□□□□□ -0.32
SF3A1-202ENST00000411423 GYPEP15421 78 aa13.03□□□□□ -0.32
SF3A1-202ENST00000411423 MRPL23Q16540 153 aaKnown RBP13.03□□□□□ -0.32
SF3A1-202ENST00000411423 ZFP69Q49AA0 526 aa13.03□□□□□ -0.32
SF3A1-202ENST00000411423 ZC2HC1AQ96GY0 325 aa13.03□□□□□ -0.32
SF3A1-202ENST00000411423 ZNF471Q9BX82 626 aaPredicted RBP13.03□□□□□ -0.32
SF3A1-202ENST00000411423 DNAH5Q8TE73 4624 aa13.03□□□□□ -0.32
SF3A1-202ENST00000411423 A0A0D9SG52 128 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 A0A1B0GV50 99 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 RS1O15537 224 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 GATA1P15976 413 aaPredicted RBP13.02□□□□□ -0.33
SF3A1-202ENST00000411423 ZNF876PQ49A33 203 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 FAM213BQ8TBF2 198 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 MBD3L1Q8WWY6 194 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 HIST1H2BAQ96A08 127 aa13.02□□□□□ -0.33
SF3A1-202ENST00000411423 PAGE4O60829 102 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 TTC32Q5I0X7 151 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 ZNF506Q5JVG8 444 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 CFAP126Q5VTH2 177 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 TMUB2Q71RG4 321 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 NEGR1Q7Z3B1 354 aa13.01□□□□□ -0.33
SF3A1-202ENST00000411423 NKX6-2Q9C056 277 aaPredicted RBP13.01□□□□□ -0.33
SF3A1-202ENST00000411423 IGHV3-73A0A0B4J1V6 119 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 A0A1W2PPQ1 181 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 KANTRA0A1W2PQU2 76 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 SIVA1O15304 175 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 CST9LP1Q5W188 147 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 COX8CQ7Z4L0 72 aa13□□□□□ -0.33
SF3A1-202ENST00000411423 PCLOQ9Y6V0 5065 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 SRIP30626 198 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 PPT1P50897 306 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 LINC00315P59091 139 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 Q6ZRN7 208 aaPredicted RBP12.99□□□□□ -0.33
SF3A1-202ENST00000411423 WFDC10BQ8IUB3 73 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 SFT2D1Q8WV19 159 aa12.99□□□□□ -0.33
SF3A1-202ENST00000411423 TNFRSF18Q9Y5U5 241 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms