RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SOHLH1Q5JUK2 328 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 ZNF506Q5JVG8 444 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 OR8G2PQ6IF36 304 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 KIR2DL5AQ8N109 375 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 OR10G4Q8NGN3 311 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 KIR2DL5BQ8NHK3 375 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 SFT2D1Q8WV19 159 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 GGACTQ9BVM4 153 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 VSIRQ9H7M9 311 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 SMCO4Q9NRQ5 59 aa4.6□□□□□ -1.67
USP40-202ENST00000409945 COL7A1Q02388 2944 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 UBE2L5PA0A1B0GUS4 154 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 C17orf112F2Z3M2 114 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 MPDU1O75352 247 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 IGKV1-17P01599 117 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 RAB31Q13636 194 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 MUC21Q5SSG8 566 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 ZNF709Q8N972 641 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 MBD3L1Q8WWY6 194 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 TMEM37Q8WXS4 190 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 TRGV9Q99603 122 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 RSG1Q9BU20 258 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 OCR1Q9BZK8 76 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 MS4A6AQ9H2W1 248 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 RPRMQ9NS64 109 aa4.59□□□□□ -1.67
USP40-202ENST00000409945 IGHV3-66A0A0C4DH42 116 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 M0R036 132 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 IFNA1P01562 189 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 LYZP61626 148 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 NUTF2P61970 127 aaKnown RBP4.58□□□□□ -1.68
USP40-202ENST00000409945 SELENOTP62341 195 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 FLI1Q01543 452 aaPredicted RBP4.58□□□□□ -1.68
USP40-202ENST00000409945 LCE1FQ5T754 118 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 CBLN2Q8IUK8 224 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 C15orf54Q8N8G6 183 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 OR1B1Q8NGR6 318 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 MUC7Q8TAX7 377 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 TP53TG1Q9Y2A0 90 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 RFNGQ9Y644 331 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 A0A1B0GV50 99 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 RBMY1BA6NDE4 496 aaKnown RBP4.58□□□□□ -1.68
USP40-202ENST00000409945 RBMY1EA6NEQ0 496 aaKnown RBP4.58□□□□□ -1.68
USP40-202ENST00000409945 RBMY1DP0C7P1 496 aaKnown RBP4.58□□□□□ -1.68
USP40-202ENST00000409945 BCL2P10415 239 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 FGF7P21781 194 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 GALR1P47211 349 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 MEOX2P50222 304 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 RAB4BP61018 213 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 CCL20P78556 96 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 VAMP3Q15836 100 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 LINC01620Q4KN68 170 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 C1orf194Q5T5A4 169 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 OR8I2Q8N0Y5 310 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 GPR82Q96P67 336 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 RARRES2Q99969 163 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 NPCDR1Q9BY65 106 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 WFDC10AQ9H1F0 79 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 NPVFQ9HCQ7 196 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 RPS10P5Q9NQ39 176 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 KCNIP2Q9NS61 270 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 DNAH9Q9NYC9 4486 aa4.58□□□□□ -1.68
USP40-202ENST00000409945 TENM3Q9P273 2699 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 CTXND1A0A1B0GTU2 59 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 C7orf77A4D0Y5 90 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 MAP1LC3B2A6NCE7 125 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 FNDC10F2Z333 226 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 M0QXV9 152 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 SRP19P09132 144 aaKnown RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 DEFB131AP59861 70 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 PLP1P60201 277 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 ACOT6Q3I5F7 207 aaPredicted RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 MORN3Q6PF18 240 aaPredicted RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 LINC00322Q6ZN03 302 aaPredicted RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 TMEM144Q7Z5S9 345 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 NIPSNAP3BQ9BS92 247 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 ACTR3CQ9C0K3 210 aaPredicted RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 MAP1LC3BQ9GZQ8 125 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 Q9HAA7 133 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 SLC39A9Q9NUM3 307 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 MRPL36Q9P0J6 103 aaKnown RBP4.57□□□□□ -1.68
USP40-202ENST00000409945 GNG13Q9P2W3 67 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 VAX2Q9UIW0 290 aa4.57□□□□□ -1.68
USP40-202ENST00000409945 A0A087WWC5 75 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 IGHV3-16A0A0C4DH30 117 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 B4DEV8 164 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 MT-ND4LP03901 98 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 ZNF726P1Q15940 193 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 RNF212Q495C1 297 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 LEMD1Q68G75 181 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 LCN15Q6UWW0 184 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 APRG1Q8IVJ8 170 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 ZFP82Q8N141 532 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 RPP25LQ8N5L8 163 aaKnown RBP4.56□□□□□ -1.68
USP40-202ENST00000409945 CYB561D1Q8N8Q1 229 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 RXFP4Q8TDU9 374 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 ZNF414Q96IQ9 312 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 MANBALQ9NQG1 85 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 STAB2Q8WWQ8 2551 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 COLCA2A8K830 154 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 H3BQ15 152 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms