RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SYNJ2BPP57105 145 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 TLN2Q9Y4G6 2542 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 NCR2O95944 276 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 MS4A6AQ9H2W1 248 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 HSPB8Q9UJY1 196 aa15.14■□□□□ 0.01
USP39-204ENST00000409766 WFDC3Q8IUB2 231 aa15.13■□□□□ 0.01
USP39-204ENST00000409766 HOXD3P31249 432 aaPredicted RBP15.12■□□□□ 0.01
USP39-204ENST00000409766 A0A096LNJ9 63 aa15.12■□□□□ 0.01
USP39-204ENST00000409766 EVI2AP22794 236 aa15.12■□□□□ 0.01
USP39-204ENST00000409766 KIR3DS1Q14943 382 aa15.12■□□□□ 0.01
USP39-204ENST00000409766 MAJINQ3KP22 176 aa15.12■□□□□ 0.01
USP39-204ENST00000409766 MAP1LC3CQ9BXW4 147 aa15.12■□□□□ 0.01
USP39-204ENST00000409766 PDZD2O15018 2839 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 H3BVH4 76 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 TCF21O43680 179 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 GAS8-AS1O95177 125 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 RNASE4P34096 147 aaKnown RBP15.11■□□□□ 0.01
USP39-204ENST00000409766 CACNG7P62955 275 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 ZNF705AQ6ZN79 300 aaPredicted RBP15.11■□□□□ 0.01
USP39-204ENST00000409766 LAMTOR2Q9Y2Q5 125 aa15.11■□□□□ 0.01
USP39-204ENST00000409766 TRAV9-2A0A087WT02 112 aa15.1■□□□□ 0.01
USP39-204ENST00000409766 LBHQ53QV2 105 aaPredicted RBP15.1■□□□□ 0.01
USP39-204ENST00000409766 ZNF747Q9BV97 191 aa15.1■□□□□ 0.01
USP39-204ENST00000409766 SPANXN1Q5VSR9 72 aa15.1■□□□□ 0.01
USP39-204ENST00000409766 KLHDC1Q8N7A1 406 aa15.1■□□□□ 0.01
USP39-204ENST00000409766 KLLNB2CW77 178 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 FLNAP21333 2647 aaKnown RBP15.09■□□□□ 0.01
USP39-204ENST00000409766 ANXA2RQ3ZCQ2 193 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 PET117Q6UWS5 81 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 TMEM86BQ8N661 226 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 TEX29Q8N6K0 151 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 TIMM8BQ9Y5J9 83 aaPredicted RBP15.09■□□□□ 0.01
USP39-204ENST00000409766 MYO9AB2RTY4 2548 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 CCDC168Q8NDH2 2452 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 OR4C46A6NHA9 309 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 K7EQG2 157 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 IGLC3P0DOY3 106 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 TFPI2P48307 235 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 SMIM15Q7Z3B0 74 aa15.09■□□□□ 0.01
USP39-204ENST00000409766 GCN1Q92616 2671 aaKnown RBP15.08■□□□□ 0.01
USP39-204ENST00000409766 C20orf202A1L168 122 aa15.08■□□□□ 0
USP39-204ENST00000409766 EREGO14944 169 aa15.08■□□□□ 0
USP39-204ENST00000409766 TNFRSF6BO95407 300 aa15.08■□□□□ 0
USP39-204ENST00000409766 C18orf65Q6ZTR6 163 aa15.08■□□□□ 0
USP39-204ENST00000409766 C2orf88Q9BSF0 95 aa15.08■□□□□ 0
USP39-204ENST00000409766 SNHG12Q9BXW3 62 aa15.08■□□□□ 0
USP39-204ENST00000409766 MAP1LC3AQ9H492 121 aa15.08■□□□□ 0
USP39-204ENST00000409766 ZNF688P0C7X2 276 aa15.07■□□□□ 0
USP39-204ENST00000409766 ASIPP42127 132 aa15.07■□□□□ 0
USP39-204ENST00000409766 SNRPD3P62318 126 aaKnown RBP15.07■□□□□ 0
USP39-204ENST00000409766 PSMG4Q5JS54 123 aa15.07■□□□□ 0
USP39-204ENST00000409766 LINC01546A6NGU7 62 aa15.06■□□□□ 0
USP39-204ENST00000409766 GATA1P15976 413 aaPredicted RBP15.06■□□□□ 0
USP39-204ENST00000409766 UQCR10Q9UDW1 63 aa15.06■□□□□ 0
USP39-204ENST00000409766 SONP18583 2426 aaKnown RBP15.06■□□□□ 0
USP39-204ENST00000409766 M0R143 59 aa15.05■□□□□ 0
USP39-204ENST00000409766 MED14OSP0DP75 135 aa15.05■□□□□ 0
USP39-204ENST00000409766 IGLL1P15814 213 aa15.05■□□□□ 0
USP39-204ENST00000409766 DEFB136Q30KP8 78 aa15.05■□□□□ 0
USP39-204ENST00000409766 SCRT2Q9NQ03 307 aa15.05■□□□□ 0
USP39-204ENST00000409766 S100A4P26447 101 aaKnown RBP15.05■□□□□ -0
USP39-204ENST00000409766 TCTEX1D4Q5JR98 221 aa15.05■□□□□ -0
USP39-204ENST00000409766 LINC01545Q5VT33 79 aa15.05■□□□□ -0
USP39-204ENST00000409766 ADAMTSL5Q6ZMM2 481 aa15.05■□□□□ -0
USP39-204ENST00000409766 A0A0J9YX75 114 aa15.04■□□□□ -0
USP39-204ENST00000409766 GNRH2O43555 120 aa15.04■□□□□ -0
USP39-204ENST00000409766 HBDP02042 147 aa15.04■□□□□ -0
USP39-204ENST00000409766 SLURP1P55000 103 aa15.04■□□□□ -0
USP39-204ENST00000409766 MRPL52Q86TS9 123 aaKnown RBP15.04■□□□□ -0
USP39-204ENST00000409766 MCRIP2Q9BUT9 160 aaKnown RBP15.04■□□□□ -0
USP39-204ENST00000409766 H0Y8G0 127 aa15.04■□□□□ -0
USP39-204ENST00000409766 FXYD7P58549 80 aa15.04■□□□□ -0
USP39-204ENST00000409766 LURAP1LQ8IV03 231 aa15.04■□□□□ -0
USP39-204ENST00000409766 OR2K2Q8NGT1 345 aa15.04■□□□□ -0
USP39-204ENST00000409766 ODF3Q96PU9 254 aa15.04■□□□□ -0
USP39-204ENST00000409766 NXT2Q9NPJ8 142 aaKnown RBP15.04■□□□□ -0
USP39-204ENST00000409766 AKAP9Q99996 3911 aa15.03■□□□□ -0
USP39-204ENST00000409766 RNASE3P12724 160 aaKnown RBP15.03■□□□□ -0
USP39-204ENST00000409766 NRACQ8N912 160 aa15.03■□□□□ -0
USP39-204ENST00000409766 UNC79Q9P2D8 2635 aa15.03■□□□□ -0
USP39-204ENST00000409766 ITPR2Q14571 2701 aa15.03■□□□□ -0
USP39-204ENST00000409766 DNAJC9-AS1A6NH13 148 aa15.02■□□□□ -0
USP39-204ENST00000409766 M0R381 172 aa15.02■□□□□ -0
USP39-204ENST00000409766 SPRY2O43597 315 aa15.02■□□□□ -0
USP39-204ENST00000409766 KRTAP1-1Q07627 177 aa15.02■□□□□ -0
USP39-204ENST00000409766 C4orf3Q8WVX3 66 aa15.02■□□□□ -0
USP39-204ENST00000409766 WFDC12Q8WWY7 111 aa15.02■□□□□ -0
USP39-204ENST00000409766 PHLDA3Q9Y5J5 127 aa15.02■□□□□ -0
USP39-204ENST00000409766 TRAV26-2A0A0B4J265 109 aa15.02□□□□□ -0.01
USP39-204ENST00000409766 LINC01619G3V211 115 aa15.02□□□□□ -0.01
USP39-204ENST00000409766 Q6ZSV7 163 aa15.02□□□□□ -0.01
USP39-204ENST00000409766 DEFB125Q8N687 156 aa15.02□□□□□ -0.01
USP39-204ENST00000409766 IGLV2-18A0A075B6J9 118 aa15.01□□□□□ -0.01
USP39-204ENST00000409766 PRSS47A8MTI9 375 aa15.01□□□□□ -0.01
USP39-204ENST00000409766 OR11H1Q8NG94 326 aa15.01□□□□□ -0.01
USP39-204ENST00000409766 A0A1B0GV90 55 aa15□□□□□ -0.01
USP39-204ENST00000409766 LEPP41159 167 aa15□□□□□ -0.01
USP39-204ENST00000409766 MRAP2Q96G30 205 aa15□□□□□ -0.01
USP39-204ENST00000409766 hDV102S1A0JD36 115 aa15□□□□□ -0.01
USP39-204ENST00000409766 FAM159AQ6UWV7 190 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms